Hdun011653.1
Basic Information
- Insect
- Hirtodrosophila duncani
- Gene Symbol
- Znf574
- Assembly
- GCA_037043425.1
- Location
- JBAMBM010000770.1:1219227-1219616[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.00032 1.6 9.1 0.2 27 48 12 33 5 38 0.87 2 3 0.00011 0.52 10.6 0.7 18 52 59 94 52 94 0.78 3 3 1.3e-06 0.0063 16.8 0.2 20 48 90 118 86 123 0.88
Sequence Information
- Coding Sequence
- ATGACCAtaaacacaacacagcacgATCTCATGTGTGATAGATGTGGTCTTAAGTTTAAGCAGAGCCGTCAATTGCGGGAGCACATAACTATTGCACATAAGGGCCTGCGTCCACATCAGTGCAGCAAGTGTTCAAAAAATTATGCACGCAAAAGCCATCTCAATGATCACATGCGCtcacatacgcaacagcgtgATTACATATGCAAAATCTGCCTGAAGGCCTTCAAACGGAGCCAGGAACTCACTCGCCATAAACGGCTGCACCAGGAGGAGAAACCATACGGCTGCCCGATGTGTCTGGCCACATTTCGTCAACATTCCGGCCTGTATAATCACAAGAGAAGCAAACATGACAAGGTTCCAGTTCAAAGAGAAGGTGTTGCTTAG
- Protein Sequence
- MTINTTQHDLMCDRCGLKFKQSRQLREHITIAHKGLRPHQCSKCSKNYARKSHLNDHMRSHTQQRDYICKICLKAFKRSQELTRHKRLHQEEKPYGCPMCLATFRQHSGLYNHKRSKHDKVPVQREGVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00804689;
- 90% Identity
- iTF_00804689;
- 80% Identity
- iTF_00804689;