Basic Information

Insect: Hirtodrosophila duncani
Gene Symbol: -
Assembly: GCA_037043425.1
Location: JBAMBM010000026.1:1989569-1996728[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 3e-05 0.0019 18.7 2.1 1 23 212 234 212 234 0.97

2 20 9.8e-06 0.00061 20.2 0.4 1 23 240 262 240 262 0.97

3 20 0.0014 0.09 13.4 0.9 1 23 268 290 268 290 0.95

4 20 2.1e-05 0.0013 19.2 3.1 1 23 296 318 296 318 0.97

5 20 4.7e-05 0.003 18.1 4.7 1 23 324 346 324 346 0.99

6 20 8.6e-05 0.0054 17.3 5.7 1 23 352 374 352 374 0.97

7 20 4.2e-07 2.6e-05 24.5 4.3 1 23 380 402 380 402 0.98

8 20 1.5e-07 9.5e-06 25.9 2.4 1 23 408 430 408 430 0.97

9 20 8.8e-05 0.0055 17.2 6.7 1 23 437 459 437 459 0.97

10 20 3.4e-05 0.0021 18.5 9.6 1 23 465 487 465 487 0.97

11 20 8.8e-05 0.0055 17.2 6.7 1 23 493 515 493 515 0.97

12 20 0.00015 0.0096 16.5 6.5 1 23 521 543 521 543 0.98

13 20 1.4e-05 0.00086 19.8 4.5 1 23 549 571 549 571 0.98

14 20 1e-05 0.00062 20.2 8.1 1 23 577 599 577 599 0.98

15 20 8.1e-06 0.00051 20.5 7.6 1 23 605 627 605 627 0.97

16 20 9.1e-07 5.7e-05 23.5 7.7 1 23 633 655 633 655 0.98

17 20 0.00028 0.018 15.6 9.5 1 23 661 684 661 684 0.95

18 20 0.0001 0.0063 17.1 0.9 1 23 690 712 690 712 0.98

19 20 0.0043 0.27 11.9 4.0 1 23 722 744 722 744 0.97

20 20 1.3e-05 0.00078 19.9 1.6 1 23 750 773 750 773 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	3e-05	0.0019	18.7	2.1	1	23	212	234	212	234	0.97
2	20	9.8e-06	0.00061	20.2	0.4	1	23	240	262	240	262	0.97
3	20	0.0014	0.09	13.4	0.9	1	23	268	290	268	290	0.95
4	20	2.1e-05	0.0013	19.2	3.1	1	23	296	318	296	318	0.97
5	20	4.7e-05	0.003	18.1	4.7	1	23	324	346	324	346	0.99
6	20	8.6e-05	0.0054	17.3	5.7	1	23	352	374	352	374	0.97
7	20	4.2e-07	2.6e-05	24.5	4.3	1	23	380	402	380	402	0.98
8	20	1.5e-07	9.5e-06	25.9	2.4	1	23	408	430	408	430	0.97
9	20	8.8e-05	0.0055	17.2	6.7	1	23	437	459	437	459	0.97
10	20	3.4e-05	0.0021	18.5	9.6	1	23	465	487	465	487	0.97
11	20	8.8e-05	0.0055	17.2	6.7	1	23	493	515	493	515	0.97
12	20	0.00015	0.0096	16.5	6.5	1	23	521	543	521	543	0.98
13	20	1.4e-05	0.00086	19.8	4.5	1	23	549	571	549	571	0.98
14	20	1e-05	0.00062	20.2	8.1	1	23	577	599	577	599	0.98
15	20	8.1e-06	0.00051	20.5	7.6	1	23	605	627	605	627	0.97
16	20	9.1e-07	5.7e-05	23.5	7.7	1	23	633	655	633	655	0.98
17	20	0.00028	0.018	15.6	9.5	1	23	661	684	661	684	0.95
18	20	0.0001	0.0063	17.1	0.9	1	23	690	712	690	712	0.98
19	20	0.0043	0.27	11.9	4.0	1	23	722	744	722	744	0.97
20	20	1.3e-05	0.00078	19.9	1.6	1	23	750	773	750	773	0.96

Sequence Information

Coding Sequence: ATGCAGCACGTGAGCGCTGCCAGTTCGGTGCCTTCGGTGGTTACGCCGGTGGTGACCACTGGTGGTACAACAATAACTTTGGGCGGTCCACCGCCACTGCCCAAGCCCGACGGTAGCAAGGAGGACGGCAGCGGCAAGCCGCCGCACGGCATTGAAATGTATAAAGTGAATATTGAAGATATTTCCCAGCTCTTCACCTACCATGAGGTATTTGGCAAGATCCACGGTGATGTGGTCAATCACCAGCTGGCGGCGGCACATGGCGGTCaattgccgccgccgccgccattgcCTCCACAGTCGCATGCGGTGAGCgccgctgcagcagcggctgcggcCTCCACAAACAATGCGGCGGTGGCTGCTGTGATGGCATCGGCCAatgcggcggcagcggctgcagcagccgcTTCGGCGGCGGTGCCTGCAGCAACGAGTGGGGTGTCCCAACAGGGCACAACGGTGGTGACCACCACGGCAGCGAGCAACAGCAATGCGGGAGGCGCGGGTACAGCGACAACCACGACGACGGGTGAGTTGCTTATGCCTAAAATGGAGGGCGGCATTCATGGCGTGGATGGGCAGTCGACGGTGACGCTGGCGCCGGATGGGACGCCGATAGCGACCGGCACGCATGTGTGCGATATTTGCGGCAAGATGTTCCAGTTTCGCTATCAGCTGATTGTGCACCGTCGCTACCACAGCGAGCGTAAGCCGTTCATGTGTCAGGTGTGCGGTCAGGGCTTTACCACCTCCCAGGACTTGACGCGGCATGGGAAGATCCACATTGGCGGGCCCATGTTCACCTGCATCGTGTGCTTCAATGTCTTTGCGAACAACACCAGCCTGGAGCGGCACATGAAGCGCCATTCAACGGACAAGCCATTCGCCTGCACCATTTGCCAAAAGACATTTGCCCGCAAAGAGCATCTGGACAATCATTTTCGATCGCACACGGGCGAAACGCCCTTCCGTTGCCAGTACTGCGCCAAGACGTTCACGCGCAAGGAGCACATGGTCAACCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTCACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGGCAAACACCCCATCAGTGCGATGTCTGCGGCAAGAAATACACGCGTAAGGAGCATCTAGCCAATCATATGCGCTCCCACACCAACGAGACGCCCTTCCGTTGCGAAATCTGCGGCAAAAGCTTCAGCCGAAAGGAGCACTTCACCAACCACATACTCTGGCATACAGCAGGCGAGACCCCTCATCGGTGTGACTTCTGCTCGAAGACATTTACACGTAAAGAACATCTGTTGAATCACGTACGTCAGCACACGGGAGAGTCGCCGCATCGCTGCACCTACTGCAACAAGACGTTCACGCGAAAGGAACACTTGACGAATCACATACACCAGCATACGGGCGAGACGCCGCATCGGTGCGACTTCTGCTCCAAGACGTTTACGCGCAAGGAGCATTTGTTAAATCACGTGCGTCAGCACACGGGAGAGTCGCCGCACCGCTGCTCCTACTGCATGAAGACGTTCACGCGCAAGGAGCATCTGGTCAACCATATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACGAAAGCGTTCACGCGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAATCGCCGCACAAGTGCACCTATTGCACCAAGACGTTTACGCGCAAGGAGCACTTGACGAACCATGTACGCCAGCACACGGGCGACTCGCCACACCGCTGCAGCTACTGCAAGAAGACTTTCACGCGCAAGGAGCACCTCACGAACCACGTCCGGCTGCACACTGGCGATTCGCCGCACAAGTGCGAGTACTGCCAGAAGACTTTCACGCGCAAGGAGCACCTCAATAATCATATGCGCCAGCACTCCAGCGACAATCCGCACTGCTGCAATGTGTGCAACAAGCCCTTCACCCGCAAGGAGCACCTCATCAATCATATGTCGCGCTGCCATACGGGCGACCGGCCCTTCACCTGCGAAACGTGCGGCAAGTCGTTCCCGCTGAAGGGTAACCTGCTGTTCCATCAGCGCAGCCATACCAAGGGTCAGGAGTGCGAGCGTCCATTTGCCTGCGAGAAGTGCCCCAAGAACTTTATGTGCAAAGGTCACTTGGTCTCGCACATGCGCTCCCATTCGGGCGAGAAACCGCACGCGTGCACTCTGTGCAGCAAGGCTTTCGTCGAGCGCGGCAATTTGAAGCGCCACATGAAGATGAACCACCCGGATGCTATGATGCCGCCACCACCCgtgcatccgcatccgcaaATACCGGCTGGTGTGCTGACGCATGTCAAGCAGGAAGTGAAACCGATCATAATTCCCCACCAATCGACGGCCACCACAATGCACACCATACAACAGATCACGGCCGGAGCAGCGGCTGGCGCCGGCGCCGTTCAGCTGACACCCGGCCTGGTGCCGTTGGTCACATCGACGCTCATCTCGCACAATGCCGCAGCCGCCGCCCAGGCACAggcgcaggcacaggcacaacaGCAATCCCAGAAGCAGGCCGCCCAGCAACAGGCTGCAGCAGCGGCCGCAGCCCAACAACAGGCTGCAGCAGCGGCCGCAGCCCAACAGCAGGCGGCTGCAGcgcatcagcagcaccagcaacaggtggcagcacagcaacagcagcaagctGCAGTGGCCgcccaccaacagcagcagcaacagctccaacagcaacaacaactgctgcaGCTGTCCATCCAACAAGCccatcatcaccagcagcaggagcagcatcgtcagcaacagcagcaacaacaacagcagcagcagcagcaacaccatcagcagcaacagcaagcgcATCCGCAggcgccaccgccgccgcaacagcagcagcaacagccacaagtGCCCATCGCCTTGATCAGTGATCCCAGTGCCTTGGCACGGGCGGCcatgcagctgcagcatcTGCCTGCGAATGTAGAACAGCATCCGGTGGTTTACTAA
Protein Sequence: MQHVSAASSVPSVVTPVVTTGGTTITLGGPPPLPKPDGSKEDGSGKPPHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHQLAAAHGGQLPPPPPLPPQSHAVSAAAAAAAASTNNAAVAAVMASANAAAAAAAAASAAVPAATSGVSQQGTTVVTTTAASNSNAGGAGTATTTTTGELLMPKMEGGIHGVDGQSTVTLAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTYCNKTFTRKEHLTNHIHQHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFACEKCPKNFMCKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTHVKQEVKPIIIPHQSTATTMHTIQQITAGAAAGAGAVQLTPGLVPLVTSTLISHNAAAAAQAQAQAQAQQQSQKQAAQQQAAAAAAAQQQAAAAAAAQQQAAAAHQQHQQQVAAQQQQQAAVAAHQQQQQQLQQQQQLLQLSIQQAHHHQQQEQHRQQQQQQQQQQQQQHHQQQQQAHPQAPPPPQQQQQQPQVPIALISDPSALARAAMQLQHLPANVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00505532;
90% Identity: iTF_00359594;
80% Identity: -