Hdun005387.1
Basic Information
- Insect
- Hirtodrosophila duncani
- Gene Symbol
- -
- Assembly
- GCA_037043425.1
- Location
- JBAMBM010000190.1:85855-93950[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.9e-09 9.7e-06 25.4 0.0 16 40 562 588 558 591 0.84 2 4 5.4e-14 1.1e-10 41.2 0.1 2 39 603 640 602 643 0.94 3 4 1.3e-17 2.5e-14 52.8 0.0 1 45 657 702 657 702 0.98 4 4 1.3e-19 2.6e-16 59.2 0.0 1 43 709 752 709 753 0.97
Sequence Information
- Coding Sequence
- ATGAGCGGCCTGCTGCGCACCGCTGagcaattgaaaatcaaaggtCTCTGTGAGACAGCTGAGAATCCGGATGATTTAAGCGAGGCGGCCACAGCGACAATAACCGTTTCGGAGAACATACATCAGACGGTTGTGGGCAGCATTGTGAATGCAGCCATAGTGCCGGGAGCGCCATCGCCCACAACACtcgagcagcagcaagcgCAGGCTCAAGTCCAGgcgcagcaggagcagcagcaacacattAACTCTGCTTTGCTATCACAACACAGCCTTGCAGCGGGCGGCGGAGCCAACAGCAGCGCCGGTGTCCAGTTGGCATCTGGGCAACTGCTAAGCACAGGAGGTGCAATAGCCAGCAACAGCCTGCAACAACAGGCggcccaacagcagcagcagcaacagacgCAACAATCTGGACTGCAACAGCCAACGCCTCGCAAATCCAGGCTTCGCAAGCGTTCCAAGTCGCCGGATCTGCAGCTGGGCAGCGGACAGCAGccacatcatcagcagcatcagcaccagcagacCATACTCATCCAGGGACAGAATAATCAGACGTCCATTGTGAGTCTGCAGCAGACCCCGGAGGGCAATTATATACCCGTATCGGCGGCGAGCGGCGACGATTCGGACGGCGAGAATAATAAGCCGAACAAAATCTGCAAGACGGAACAGTCGGTGACATCGCCGGCATCCGATTCATCAAGCACATCGAATACAAATAATGCTGCCGGCGTGAGCGGCGTGACAGCAGCGGGCCAAGCGATCGTGACACAAATTGTAGTAGCGCGCGACGGAAAAGATAAAAATATGACTAGTTTAGGCATGGGCATGAACGGCGGCTTGTTGGGCGTGCCCATGGGATTTCTGGATTTTACACCAGAACCACCAGCACCATCGGCCACACCAGTCACCGTAACGGAACACGTCGATCTATCGTGCAACCCCAGCACCGATACGCGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCATTTGGCTCAGCAAATCCATCGGCTCGATCAATCTCCAATGCATTCGATAGCGCATCATCATACCGGCGACGAGAGCAACTCGAATCTGGTGCAGCACATCAAGAGTGAGGTGATCGATGCCAAGCATTTGGCAGCGGCGCAACagcatgcccatgcccatgtgcaggcgcagcagcaggcgcATGCCCATCATcaggcccagcagcagcatttgcatgcccagcagcaacaacagcagcagcaattgcttGCCCAGAGTcaagcgcagcagcagcaacaacagcagcaacatcaccagcagcaacagcagcaggttGTGCATGCCCAGCATGGGGCACACGGCACGCATGGAGAGATTAGCGGAACCACTGTAATGGAGATTGATCCGAGCCAGATCAAACATGAGCCGGGCATGATAATAACGCCAGAGATTGTCAATATGATGTCCTCCGGTCATATGGATATGTACAACTCGGATACGAGCGAGGACTCAATGATGATCGCAAACGGTTCGCCGCACGATCAGAATGAGCCGCATTATACGAATTTGGATCAACAGCACGGCGGCGGCCTGGGCAGCAGCATTTGCGGCCCCGGCGCcggtggtgctggtggcggTGGAttgggtggtggtggtggtgctggctCTGGGGAGAAAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATCCCATCGACCACACTCTGGCAGCGTGCTCATCGTTTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAATCGTGGAACGAGGATGCTTTGCAAAATGCCTTGGAGGCACTGCGCTCTGGTCAGATATCGGCTAATAAAGCGTCCAAAGCCTTTGGTATACCCTCATCGACGCTCTACAAGATTGCGCGTCGGGAGGGCATACGTTTGGCGGCGCCATTCAATGCCGCCCCAACCACGTGGACACCCGAGGATTTGGAGCGTGCATTGGAGGCGATACGTGCCGGCAATACATCTGTACAGAAAGCGAGTGCTGAATTTGGCATACCCACAGGAACACTTTATGGACGCTGCAAACGGGAGGGCATTGAACTGTCGCGTTCAAATCCCACACCTTGGTCCGAGGATGCAATGAACGAGGCATTGAACTCAGTGCGCGTTGGCCAAATGTCCATCAATCAGGCGGCCATACACTATAACCTGCCCTATAGCTCGCTCTATGGACGCTTCAAGCGTGGCAAATATGATGTGGTGACCAATACCAGCTCGCTGATGAATAACTCGGGGAATACAACGGGCAGCATTGAGATTATCGAGCATAGTCAGGAGAACTCGTTGCATATGTTGCAGCAACAGTTCCCGTACAGTCCGTCGCCGCATCCGCCGCAAACGCCACAACATCATAGCACGCCGCAGCATCACAGCGCATCGCAGGGTCCGCCAACGCCACAGCATATGCAACAGCATGTGGTGcacatgcaacagcagcagcaacagtcgcCGCATCAGGCCCATGGGCATCAGCAAcacttgcagcagcagcaacaggatgTGGTGACATCAAGCAGTCAGGTGGTGCatagccaacagcagcagcagcaacagcagctccagcagatCTATCAGCATCATGGCACGCCGGAGCGTAGTTGA
- Protein Sequence
- MSGLLRTAEQLKIKGLCETAENPDDLSEAATATITVSENIHQTVVGSIVNAAIVPGAPSPTTLEQQQAQAQVQAQQEQQQHINSALLSQHSLAAGGGANSSAGVQLASGQLLSTGGAIASNSLQQQAAQQQQQQQTQQSGLQQPTPRKSRLRKRSKSPDLQLGSGQQPHHQQHQHQQTILIQGQNNQTSIVSLQQTPEGNYIPVSAASGDDSDGENNKPNKICKTEQSVTSPASDSSSTSNTNNAAGVSGVTAAGQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHTGDESNSNLVQHIKSEVIDAKHLAAAQQHAHAHVQAQQQAHAHHQAQQQHLHAQQQQQQQQLLAQSQAQQQQQQQQHHQQQQQQVVHAQHGAHGTHGEISGTTVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGGLGSSICGPGAGGAGGGGLGGGGGAGSGEKDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVTNTSSLMNNSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPQTPQHHSTPQHHSASQGPPTPQHMQQHVVHMQQQQQQSPHQAHGHQQHLQQQQQDVVTSSSQVVHSQQQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00473901;
- 90% Identity
- -
- 80% Identity
- -