Basic Information

Insect: Hirtodrosophila confusa
Gene Symbol: Trerf1
Assembly: GCA_035043065.1
Location: JAWNNI010000028.1:1503401-1520501[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.00016 0.013 16.3 0.2 2 23 344 365 343 365 0.97

2 6 6.8e-06 0.00056 20.7 1.4 1 23 371 393 371 393 0.98

3 6 0.0005 0.041 14.8 2.5 1 23 399 423 399 424 0.94

4 6 0.00083 0.068 14.1 0.8 2 23 690 711 689 711 0.97

5 6 0.0023 0.19 12.7 0.1 1 23 1839 1863 1839 1863 0.98

6 6 0.00011 0.0092 16.9 0.8 1 23 2025 2047 2025 2047 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.00016	0.013	16.3	0.2	2	23	344	365	343	365	0.97
2	6	6.8e-06	0.00056	20.7	1.4	1	23	371	393	371	393	0.98
3	6	0.0005	0.041	14.8	2.5	1	23	399	423	399	424	0.94
4	6	0.00083	0.068	14.1	0.8	2	23	690	711	689	711	0.97
5	6	0.0023	0.19	12.7	0.1	1	23	1839	1863	1839	1863	0.98
6	6	0.00011	0.0092	16.9	0.8	1	23	2025	2047	2025	2047	0.98

Sequence Information

Coding Sequence: ATGGCTGCCATAAATACGGTACCCAAAAGCATACACCTGCCATTGACGAGTCTCAGTGCGCCGCGCGTGTTGATGTGCAGCGCCTCCGTGGGCACCGAGGGTTCCGTGACACTGCAACTGAGAGATGCAGCCGatagcacaacaacagcaacaacagcaacatcagcaacatcagcaacaacagcagcaacagcgtcATCAACGAATGGCATCACAGTGCTTGAAACATCGTCAGCGTCGTCGTCAGGCATAACGTCAGCATTGGAGAATGCGCTGACCATTGGCTATCCGGATCCGGACATGCTAGCAGATGTTCTGGGCACAATACAGACAGCCTCTCTCAAAAACAAgcacatcagcaacatcaacagcagaaGAAGTAGCAACATCTacaccagcagcagaaacGTCAGCACTGCACCAACAATTCTTAACAATACCATTGGAACAAACAGCTCTGGCATCCATCTGAATAATCCCAATAAGATAACCATAACGCGGCGCAGCGCCAGCAACAAGATCAGCGTACAAACAGTGAGCACCTCCACAAATACAACCATTAGCAGCATTAGCGGCAGCAAGACCAACTACATTAAGAACTGTCTAatacgcagcagcagctgcagcaacacgGCCACCAATGTCACGACGCTGGCACAGATTatgagcaacagcagcaccagcagcgcTGCCAGTATACTCAGTCAgcacaacaataatagcaattgcagcaacagcagcaactttaGCAACGCCTCATCTGTGGGCAGCAGCATTAGCATtggcagcaccagcagcagcaccaacagcagcagcaacagcagcagcaacagcaatagcaacgacagcaacagcagcagcggtcACAGTTTAAGTTTCAAGAGCAACAACGGTCGAAATGTTTCCGGTGTAGTCACTGCAACAGCATCCACAAACACCACAACAACTGCCATTGGCATTGTCACCGTCGACACCAACCCCCGCAAGAGCCGACCCAAGTTATCATCACCAACACGGCACGGACCACAGCAGTGCCAGATTTGTAGCAAGATCTTTGGAAATGCCTCGGCGCTGGCCAAGCACAAACTGACGCACAGCGACGAACGGAAATATATTTGTGTGCTCTGCTCGAAGGCATTCAAGCGGCAAGATCACTTAAACGGACACATGATGACGCACCGCAACAAGAAGCCTTATGAGTGTAAGGCGGATGGATGTGGCAAATCATATTGCGATGCCCGCTCTCTGCGCCGTCACTCAGAGAATCACCATGGAGGCGTGGCAACGCCCGTCAATAACTCACTCTCGCCTACGGGCAGCACTATCTGCAGCGGCCTGAGCAGCgccggctgcagcagcagcagcagcagtagcagcagcactGCCAGCGTGGCCACCAGCTCGCTAAGTCTGTCGCCGGCCACGGCCAGCGGGGATGCCAGCTCCCCGGATGGGGCCACCTGCATACGCACCTATATATCCACGGGCAGCAGTGTGGTGGATGCGGCCACCGGCATCGCGCTCTCCGATGAGCAAATCAAGGCCATGAACTTACCCATCAAAACGGGCGTCACACTGCTCTCGCCCACCACATCGACATCCTCGAACGCATCCTCGACGGCATCCTCGCTGTGCTCGTCCTCCGTCGGCAGCGTCTGTGGCAACACTAATACCACCCTGACCAGCTCGCCCACCATAACGCTCACCGATGGAGCCATGCTGGAGGGGGAGGGACTCACCCGCGAGCAACTCGATCTCATCAGCAAGATCATGCAACAGACGAAGCAAACCAGCGCCCAGGTGACCGTGTCCTCGCCCACCAGCGTCAGCTCCTACAAGATCAATACAGAGTCCTCGCCGGTGCAGACGCGTCCTCGCACCTGGAACATGCAATTGCTGAACAACGCGCAAAATGTGACCGTAACCGTTGAGGATGGCACCGAACTGGTTGCCTCCGGCTCCGCCGCCAGCTCGCCCGATAACGTCAAGGACGAGGATCTCAGCCAGCAGCTAGTGACCGCTATCAATCCCCACCTGCTCAATATTGTCAAGATTGACAAGCCAGTTGAGTGCAATCTGTGCCACCGTAAGTTCAAGAACATACCCGCCCTCAATGGGCATATGCGTCTGCATGGCGGCTACTTCAAAAAGGATACGGAAACGAAGCGCAGCGAGAAGAAGGAGTCGAGCGGACCACCCTTGCAGACAGCCAGCATTGGTGTGCGCGCCCTCATCGAGGAGAAGATTATAAGCAAGCGCAAGGACATCACCAAGGGCTCCTTCGTAGTGCCTGCACCGCCCAGCAGCGTGGCCAATAGCGGTGGGGTCGgcggcagcggtggcagcaatagcggcaacagcagcctgCGCCGCTCCATAAGCGACTTGGAGAGTTTTCTCAATCCGAAGAGCAATACGAGCAGCTTGAGCCAGGCTCtagccaccagcagcagcaccaccaccacatcGGTGCTGCCAGCGGCCACCACCATAAAGAGCAGCAATGGGCTAAGCATACAGCAGATAGGCCTGCCCCAGAGCATTGAGATCTTCAGCGGTGGTCAGAGACAGCCAAAGACGCTCAGTTTGGGCAGTGGTGCCAATACCATTACCATAACCACCAACAATGTGCCCACCACAACCACAATGAGCGCTTTGACGGCACTAAAGGGCGGCGGCAGCATCGGTGGCGTCACCAGCAATGTGGATCCCAAGGATTCCACATTGATTGAGCTGCTTAAGCGCGGCACGCGCATTGCTGTCACCTCCAAGAAGACGCAGCTGCAGGCACAAGCCAGCACAAATCTGCTGCTGAGCAATGTTGGCGCCACCGAGCTGACAACCATTGGTAGCAGTGTCCAGGCAGCGCGCCAGATCATCACCAACAACAATCGCACCGTCATCATACCCTCGGACGTGCATGTGGTGTCCACCAAAACGAGCAAGCTAATCTCGAGCAGTCCTATTATGACCAGCACCGGCACCAATACACCATGCAACTCGAACAGCATATCCTTGTCGGATGGCACACCCCTCTCCCTGACCATTGCGCCCAGTCAGGAGAGTCTTGGCGTTGTGGGGGAGGCAAGCAGCATCACTGGGGGCGGGGGCGGCGTCTATACGGTTACCTACACCAGCAATGCGGATGCTTCCGATCTCTTTGACGATGCCGAGGTATATAATGTCTCGGATACGGAAATGCTGCTGCAAACTGTGGACACTATGGAGCTGCTCAACGATGACGAGGACGAGGCCCACAAAACCGAACATTCCGAGGATTTTGCGCTGCTCAGCGAGGCCGGCGACAATGTGCACACCCAGCTGGTGAAGCTGGAGCCGGAGTCTGGCCATGGCAATGTCAGTCAAACGACGCCGCTGCCCACCTTCCAGCAATTCCATTCCAAGGAGCTCATCATGCAGAACAGCTCACAGATCCAGGCCATTGCCAATATgcgtggcagcagcagcagcactctGGGCGTCCTCTCCTCCCCGTTGCACTCGCCACTAGCCTATCCGACGCCGCCGTCCAGCCACGAGAATGTGGCCCAATCCTCACCCTTCATTGAGGATGCCGCGGCTCAGTTTGTGGATGCCAATCACACGTTCTTTGGCGACAAGACCGACTTCTCACACGTCTATTTCAAGACGGATGACAGCGATTCCATGCAGCAGCTCAGTGAGAATGACAACGAGAAGATACTCAAGCTGAAGACGGTACTCGAGGAGAGCAGCTTCGATCCTTCGATCAAGGTGGAGGATCTTCTGAACAGCACCGAGGATGATGCTGAATGCGATCTGCGCGAGTTTGCCGAGACAAATCTATCGTTTCTCGATGAGGATCAGGAGTTTCTGAATGACTCACGTAATGCTACCTCTCCGTTGTCCGAGTCCTTTTTTACCAGCGGCATTGGCTCCGCCGAGGATGTTAAGCAAGTGCTGCGTGAGGTTCTGCCGGATGAAAATATGCAGCTGAGCAGCGAACAGCAGGGCGAGAATATTATTGATCTCTACTATTTGCCAGGACTCGGCCTGCAATCCCAAATGATGCCCAACTCGGATGATCCGCTTCTGTCATCCTCGCCGCGTGACTTTGGCCAGCAGCGTCAGGTGCTTaacaccacaacaacagcaacgtcTACGAGCGTGCAACCAATGGAGCAGTTGCAGACTACCACGGTGCTTTacgagcaacagcagcagcaacagcagcaacagcagcaacagcagcaacagcagcagcagcaacagcagcagcagcaacaacagcagcagctacagcaacCCCAGCAAccccagcaacagcaacagttgctctTGACACAGCAACCTGCCATTCAGCCGGAAcagccgcaacagcaacagcagccggaGTTTATGCTACCCACCTTTGCGCCCGTGTCCTGTCAGACACAGTATCTGGACACTAACCAGCAGCCAATGACGCTGCAGCCAATGAACAGCctgctgcagccgctgctgtacggcaacagcagcaacaccaacaacaacgacaagcAGGAATTCACCACGCTGCTCAAATCCAATGCCGGCCAGGCAACTACCCTGGATGCCAGTATCCTCTTTGGCTgcggcgacaacaacagcaacaacaacagcaacaacaacagcaacaacaacagcaacagcaacaactgcatcAAGCCGATGCTAGCCACCTTGCCCGTGGCAGTGCCCCCTCCAGCTGTTGCACCCGTAGCCACCGTTACCAATCTGCAGCCGCTGTCAAACCAAACCAATTCCATACTGAAGCGACGCCTGCGTTCGAATGGAGCACACGATCTGCACAAGTTCTCCAAGTTCCATACACTATCGCCGCATCGCTCCAAGCTGCGCAAGCCCTCACGCACACACTACACTCCGGCGCCGATACTGAATCCTGATCGTAAGGGCACAGGACTCTATTGCAATGTGCGCAAGCAGCTTGGTCAGGGCATGTTTGACGGCTTTGATGATGACTTTGGCGATCCTGTCGGCCTGGTGGATTTCTCCGACGACTCTAAGGTAAATCTTGGCTCCACATATCAGGCGCAGATACCCGCCTGCAAGCCGCTAGGCGAGTCCTGCAAGGAGTCGGGGGGCGCCGACTTGATCTGGGATCCCAGCGTGCAGATTGACGAGAAGATACTGATGCGTTACATAGATCTCAGCAAGTCATCGGCGGTGCCCATGGGCAGCCATTCCGAGGAGGTGGCCCTCCAAACGCTGCTCGAGGCGAGGGGCAACTCGGCGGCTGCAGTGCTTACGCTGCTCCAGACACAGTCCAACGCATTCCAAATGAAATGGACTGCCTACGAGCTGGAGCAGTTCCTGCGTGGCCTGGAGAAGCATGGCAAGGACTTCGGAAAGATTGCCAGCGAGCTGCTCACAAAGACCTCCGGCGAGTGCGTgcaaatgtattatttttggaaGAAGCTCTGTGTGGACTACAAGGTATCTCACCTGAAAATGGAGCCAGTTACGCCCAGCACCCCCCCGGTGGAGCAGAAGCCCTACGTTTGCGAGATTGCCGACTGTTCGGCGAGCTTCAGTTCAAAAGCGGCGCTGCACGGTCATGTTCGCATACACGCTTACGGTAGAAATgccagcaaccacaacaacaacaacaacagcaatcagCATGCCACGGCAATTagtgccaacaacaaccatagttgcaacaacagcaacagcaatagccaCAACACCAATAGCAGCAACGCATGCATGCCTCAGactagcagcaacagcaacagcagcaacagcaacaacaatcaatgcattaatgcaacaacaacatcatcaacaacaacaacaacaacaacactaacgCACCCCAACGGCAATATAACCACAAtaatcagcaacaacaacaattccaaTGCTGGCCCATCCTTAAATGCAACGCTCCTAGCCGCCGTCGCTGCCGCCGGTGCAGGGGCAGTGACAGGAGCAGtgacaggagcaggagcaggggcaggggcagcagcagcagcaacaacaacaacaacatcgacagcaacaaaagacagcagcaacagcaacaattccAATATTGCCAAGGACAGCGAGTTCCCCTGCAAGGTGTGCGGCAAAGTCTTCAATAAGGTTAAGAGCCGCAGCGCCCACATGAAAACGCATCGTGTGCAGGATCCGGAACAATCATCCAATTCCAAACAGCAATCGTCTAGCCATGTTAACGGAAATCTATCTGCAGTAGCAGTATCCACATCCTCAGCAGTATCGGTCACGGCCAGTACAACATCAtag
Protein Sequence: MAAINTVPKSIHLPLTSLSAPRVLMCSASVGTEGSVTLQLRDAADSTTTATTATSATSATTAATASSTNGITVLETSSASSSGITSALENALTIGYPDPDMLADVLGTIQTASLKNKHISNINSRRSSNIYTSSRNVSTAPTILNNTIGTNSSGIHLNNPNKITITRRSASNKISVQTVSTSTNTTISSISGSKTNYIKNCLIRSSSCSNTATNVTTLAQIMSNSSTSSAASILSQHNNNSNCSNSSNFSNASSVGSSISIGSTSSSTNSSSNSSSNSNSNDSNSSSGHSLSFKSNNGRNVSGVVTATASTNTTTTAIGIVTVDTNPRKSRPKLSSPTRHGPQQCQICSKIFGNASALAKHKLTHSDERKYICVLCSKAFKRQDHLNGHMMTHRNKKPYECKADGCGKSYCDARSLRRHSENHHGGVATPVNNSLSPTGSTICSGLSSAGCSSSSSSSSSTASVATSSLSLSPATASGDASSPDGATCIRTYISTGSSVVDAATGIALSDEQIKAMNLPIKTGVTLLSPTTSTSSNASSTASSLCSSSVGSVCGNTNTTLTSSPTITLTDGAMLEGEGLTREQLDLISKIMQQTKQTSAQVTVSSPTSVSSYKINTESSPVQTRPRTWNMQLLNNAQNVTVTVEDGTELVASGSAASSPDNVKDEDLSQQLVTAINPHLLNIVKIDKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDTETKRSEKKESSGPPLQTASIGVRALIEEKIISKRKDITKGSFVVPAPPSSVANSGGVGGSGGSNSGNSSLRRSISDLESFLNPKSNTSSLSQALATSSSTTTTSVLPAATTIKSSNGLSIQQIGLPQSIEIFSGGQRQPKTLSLGSGANTITITTNNVPTTTTMSALTALKGGGSIGGVTSNVDPKDSTLIELLKRGTRIAVTSKKTQLQAQASTNLLLSNVGATELTTIGSSVQAARQIITNNNRTVIIPSDVHVVSTKTSKLISSSPIMTSTGTNTPCNSNSISLSDGTPLSLTIAPSQESLGVVGEASSITGGGGGVYTVTYTSNADASDLFDDAEVYNVSDTEMLLQTVDTMELLNDDEDEAHKTEHSEDFALLSEAGDNVHTQLVKLEPESGHGNVSQTTPLPTFQQFHSKELIMQNSSQIQAIANMRGSSSSTLGVLSSPLHSPLAYPTPPSSHENVAQSSPFIEDAAAQFVDANHTFFGDKTDFSHVYFKTDDSDSMQQLSENDNEKILKLKTVLEESSFDPSIKVEDLLNSTEDDAECDLREFAETNLSFLDEDQEFLNDSRNATSPLSESFFTSGIGSAEDVKQVLREVLPDENMQLSSEQQGENIIDLYYLPGLGLQSQMMPNSDDPLLSSSPRDFGQQRQVLNTTTTATSTSVQPMEQLQTTTVLYEQQQQQQQQQQQQQQQQQQQQQQQQQQQQLQQPQQPQQQQQLLLTQQPAIQPEQPQQQQQPEFMLPTFAPVSCQTQYLDTNQQPMTLQPMNSLLQPLLYGNSSNTNNNDKQEFTTLLKSNAGQATTLDASILFGCGDNNSNNNSNNNSNNNSNSNNCIKPMLATLPVAVPPPAVAPVATVTNLQPLSNQTNSILKRRLRSNGAHDLHKFSKFHTLSPHRSKLRKPSRTHYTPAPILNPDRKGTGLYCNVRKQLGQGMFDGFDDDFGDPVGLVDFSDDSKVNLGSTYQAQIPACKPLGESCKESGGADLIWDPSVQIDEKILMRYIDLSKSSAVPMGSHSEEVALQTLLEARGNSAAAVLTLLQTQSNAFQMKWTAYELEQFLRGLEKHGKDFGKIASELLTKTSGECVQMYYFWKKLCVDYKVSHLKMEPVTPSTPPVEQKPYVCEIADCSASFSSKAALHGHVRIHAYGRNASNHNNNNNSNQHATAISANNNHSCNNSNSNSHNTNSSNACMPQTSSNSNSSNSNNNQCINATTTSSTTTTTTTLTHPNGNITTIISNNNNSNAGPSLNATLLAAVAAAGAGAVTGAVTGAGAGAGAAAAATTTTTSTATKDSSNSNNSNIAKDSEFPCKVCGKVFNKVKSRSAHMKTHRVQDPEQSSNSKQQSSSHVNGNLSAVAVSTSSAVSVTASTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00531181;
90% Identity: iTF_00805455;
80% Identity: iTF_00803540;