Basic Information

Insect: Hirtodrosophila confusa
Gene Symbol: -
Assembly: GCA_035043065.1
Location: JAWNNI010000212.1:3619018-3626758[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.8e-05 0.0023 18.8 2.1 1 23 255 277 255 277 0.97

2 18 9.2e-06 0.00075 20.3 0.4 1 23 283 305 283 305 0.97

3 18 0.0013 0.11 13.4 0.9 1 23 311 333 311 333 0.95

4 18 1.9e-05 0.0016 19.2 3.1 1 23 339 361 339 361 0.97

5 18 4.4e-05 0.0036 18.1 4.7 1 23 367 389 367 389 0.99

6 18 8.1e-05 0.0066 17.3 5.7 1 23 395 417 395 417 0.97

7 18 4e-07 3.2e-05 24.6 4.3 1 23 423 445 423 445 0.98

8 18 1.4e-07 1.2e-05 26.0 2.4 1 23 451 473 451 473 0.97

9 18 8.3e-05 0.0068 17.3 6.7 1 23 480 502 480 502 0.97

10 18 0.00014 0.012 16.5 6.5 1 23 508 530 508 530 0.98

11 18 1.3e-05 0.0011 19.8 4.5 1 23 536 558 536 558 0.98

12 18 9.3e-06 0.00076 20.3 8.1 1 23 564 586 564 586 0.98

13 18 7.6e-06 0.00062 20.5 7.6 1 23 592 614 592 614 0.97

14 18 8.5e-07 6.9e-05 23.5 7.7 1 23 620 642 620 642 0.98

15 18 0.00026 0.022 15.7 9.5 1 23 648 671 648 671 0.95

16 18 9.4e-05 0.0077 17.1 0.9 1 23 677 699 677 699 0.98

17 18 0.001 0.084 13.8 3.4 1 23 709 731 709 731 0.97

18 18 1.2e-05 0.00096 19.9 1.6 1 23 737 760 737 760 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.8e-05	0.0023	18.8	2.1	1	23	255	277	255	277	0.97
2	18	9.2e-06	0.00075	20.3	0.4	1	23	283	305	283	305	0.97
3	18	0.0013	0.11	13.4	0.9	1	23	311	333	311	333	0.95
4	18	1.9e-05	0.0016	19.2	3.1	1	23	339	361	339	361	0.97
5	18	4.4e-05	0.0036	18.1	4.7	1	23	367	389	367	389	0.99
6	18	8.1e-05	0.0066	17.3	5.7	1	23	395	417	395	417	0.97
7	18	4e-07	3.2e-05	24.6	4.3	1	23	423	445	423	445	0.98
8	18	1.4e-07	1.2e-05	26.0	2.4	1	23	451	473	451	473	0.97
9	18	8.3e-05	0.0068	17.3	6.7	1	23	480	502	480	502	0.97
10	18	0.00014	0.012	16.5	6.5	1	23	508	530	508	530	0.98
11	18	1.3e-05	0.0011	19.8	4.5	1	23	536	558	536	558	0.98
12	18	9.3e-06	0.00076	20.3	8.1	1	23	564	586	564	586	0.98
13	18	7.6e-06	0.00062	20.5	7.6	1	23	592	614	592	614	0.97
14	18	8.5e-07	6.9e-05	23.5	7.7	1	23	620	642	620	642	0.98
15	18	0.00026	0.022	15.7	9.5	1	23	648	671	648	671	0.95
16	18	9.4e-05	0.0077	17.1	0.9	1	23	677	699	677	699	0.98
17	18	0.001	0.084	13.8	3.4	1	23	709	731	709	731	0.97
18	18	1.2e-05	0.00096	19.9	1.6	1	23	737	760	737	760	0.96

Sequence Information

Coding Sequence: ATGCAGCACGTGAGCGCTGCCAGTTCGGCGCCTTCGGTGGTTTCAGCACCGGTGGTGACCACTGGCGGTGGCACCACCATCACGTTGGGCGGCCCACCGCCGTTGCCGGGCAGCAAGAGCGATCATAGCAAAGAGGACGGTGGCAATAAGCCGCCACACGGCATTGAAATGTATAAAGTGAACATTGAGGATATATCACAGTTATTTACGTATCACGAGGTCTTTGGCAAAATCCATGGCGATGTGGTTAATCATGTGGCGGCGGTGCATGGCAGCCAGCTGCCACCGCCGCagctgccaccgccgccgccactgCCGCCCCAAACGACGCATTCGGCTagcgcagctgcagcagcagcggcggcgtcCACAAATAATGCAGCCGTCGCTGCTGTAATGGCCTCGGCCAATGCAGCAGCCGCGGCTGCAGCGGCCGCTTCGGCAGCCGCATcagcacagcaacagcaacaacaacagcagcaacaacaacagcagcaacaacaacagcagcagcagcagcaacagcagcagcagcagcaacaacaagtgccTGCAACAAGCACAAATGCTGGCACACAACAGGGCAGCGCCACAGTGACCACAACCAGCTCGGGGGGCAGCAatgggggtggtggggtcacaggcacgacgacaacgacgggTGAGTTGCTAATGCCTAAAATGGAGGGCGGCATTCATGGCGTCGATGGCCAGTCGAGCGTTGCGCTGGCGCCGGATGGCACGCCCATTGCGACGGGCACGCATGTGTGCGACATTTGTGGCAAGATGTTCCAGTTTCGCTATCAGCTGATTGTGCACCGCCGCTACCATAGCGAGCGCAAGCCGTTCATGTGTCAGGTGTGCGGTCAGGGTTTTACCACATCCCAGGATTTAACACGCCATGGTAAAATACACATTGGTGGTCCCATGTTTACCTGCATTGTGTGCTTCAATGTTTTTGCCAATAATACCAGTTTGGAGCGCCATATGAAACGGCATTCAACGGACAAGCCATTCGCCTGCACCATTTGCCAAAAGACATTTGCACGCAAAGAGCATCTGGATAATCATTTTCGTTCCCATACGGGCGAAACGCCGTTCCGTTGCCAGTACTGCGCCAAGACGTTTACGCGCAAGGAGCACATGGTCAATCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTCACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGTCAAACACCGCATCAGTGCGATGTCTGCGGCAAGAAATACACGCGCAAGGAGCACCTAGCCAACCATATGCGCTCCCACACCAACGAGACGCCGTTCCGTTGCGAAATCTGCGGCAAGAGCTTTAGTCGCAAGGAGCACTTCACCAATCACATACTCTGGCATACAGCAGGCGAGACGCCGCATCGGTGCGACTTCTGCTCCAAGACGTTTACACGCAAGGAGCATTTGTTAAATCACGTGCGCCAGCATACGGGAGAGTCGCCGCATCGCTGCTCCTACTGCATGAAGACGTTCACGCGCAAGGAGCATCTGGTGAATCATATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACGAAAGCGTTCACACGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAATCGCCGCACAAGTGCACATACTGCACCAAGACGTTTACACGCAAGGAGCACCTCACGAATCATGTCCGACAGCACACGGGCGATTCGCCGCATCGTTGCAGCTATTGCAAGAAGACCTTCACCCGGAAGGAGCATCTGACGAATCATGTACGCCTCCATACTGGAGATTCGCCCCACAAGTGCGAATACTGCCAGAAGACGTTCACACGCAAGGAGCATCTCAATAATCATATGCGACAGCATTCAAGTGACAATCCCCATTGTTGCAACGTGTGCAACAAGCCGTTTACACGCAAGGAGCATCTGATTAATCACATGTCACGCTGCCACACCGGCGATCGCCCCTTCACCTGCGAGACATGCGGCAAATCGTTCCCCCTCAAGGGCAATCTGCTATTCCATCAGCGCAGCCACACCAAGGGTCAGGAGTGCGAGCGTCCATTTGCCTGCGAGAAGTGCCCCAAGAACTTCATATGCAAAGGTCACTTGGTCTCGCACATGCGCTCCCATTCGGGCGAGAAACCGCACGCGTGCACACTGTGCAGCAAGGCTTTCGTCGAGCGCGGCAATTTGAAGCGCCACATGAAGATGAATCACCCGGATGCTATGATGCCGCCACCACCCgtgcatccgcatccgcaaaTACCGGCTGGTGTGCTGACCCAAGTCAAGCAGGAAGTGAAACCGATCATAATTCCCCATCACTCGGCGACGACCACAATGCACACCATACAGCAGATAACAGCGGGGGCCGCCGCGGCGGGCGCCGGTGCCGTCCAGCTGACGCCCGGCCTGGTGCCGCTCGTCACCAGCACGCTCATCTCGCACAACGCACAACAAtcgcagaagcagcagcaacaggtgGCCGCAGCCGTTGCGGCACAACAGCAAGCGGccgctgcggcagcggcacaGCAACAGGCCGCGGCAGCCGCGGCGGCACAGCAgcaagcggcagcagcggcgcatcaacagcaccagcagcaggtcgccgcacaacagcaacagcagcaacaacagcagcagcaggcggccGTTGCAGcccatcagcaacagcaactgcagcagcaacagttgctgcagcTGTCCATACAGCAGGCGGCGCACCaccatcagcatcagcagcagcaacaacagcagcagcatcatcagcagcagcagcagcagcaggcgcatcaacagccgccgcagcagcagcagcaacaacagcaacaggcgcCCCCACAGGTGCCCATCGCATTGATAAGTGATCCCAGCGTGCTGGCGCGTGCCGccatgcagctgcagcatctGCCCACAAATGTGGAGCAGCATCCGGTGGTTTACTAA
Protein Sequence: MQHVSAASSAPSVVSAPVVTTGGGTTITLGGPPPLPGSKSDHSKEDGGNKPPHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHVAAVHGSQLPPPQLPPPPPLPPQTTHSASAAAAAAAASTNNAAVAAVMASANAAAAAAAAASAAASAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQVPATSTNAGTQQGSATVTTTSSGGSNGGGGVTGTTTTTGELLMPKMEGGIHGVDGQSSVALAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFACEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSATTTMHTIQQITAGAAAAGAGAVQLTPGLVPLVTSTLISHNAQQSQKQQQQVAAAVAAQQQAAAAAAAQQQAAAAAAAQQQAAAAAHQQHQQQVAAQQQQQQQQQQQAAVAAHQQQQLQQQQLLQLSIQQAAHHHQHQQQQQQQQHHQQQQQQQAHQQPPQQQQQQQQQAPPQVPIALISDPSVLARAAMQLQHLPTNVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00560429;
90% Identity: iTF_00560429;
80% Identity: -