Hcon001176.1
Basic Information
- Insect
- Hirtodrosophila confusa
- Gene Symbol
- sba
- Assembly
- GCA_035043065.1
- Location
- JAWNNI010000024.1:5068391-5083656[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-08 2.7e-05 24.2 0.1 8 58 255 296 248 330 0.79 2 2 0.53 1.3e+03 -0.5 0.0 28 41 347 364 322 366 0.68
Sequence Information
- Coding Sequence
- ATGGCTGCCGCATCCGCTGGCcaacagttgcaacagcagcagcagcagcagcaacagcagcagcataaattGAACATTGTTGGCAGTGCGGAGACGATTGCTGGCGTGCTGCAGGTCAACgagttgcaacagcagcaacaacagctcaaCATGtacaagcaacagcagcagcagcagcaacatcagcaaatgttgcatcaacagcaacagcagcagcagcaattctatcagcagcagcaaacgaaATTTGTATCGCGGGTCGTTACAAATGCcgcaatgcaacaacaacagcagcagcaacaacaaatcttACCAGCTGGTTTGGTAAATGGTAGCGCAAACATGATGCAAGCCACAAATGTTGccgggcagcggcagcaacagcaacagcaacagcaacaacagcgccaGAGTCAGCACATTTTTGTGTGTCCAGCCATCAGTCCGCaacttcagcagcagcagcagcaacaacaacaacagcaacaaaccaAACAGCGTCAAGCGCAAATAAAGCTGCCTGTTAAgtcaccagcagcaacagcaactgttgctgccgtgCATTGCTtgccagcaacagttgcatcGCATCAAATGAGTCAGAAcaatcaacatcaacatcaacatcaacatcagcaacagcaacagctctATGCAAAGAATGTTGCCAAAACCAACAATGCCAACCATAATGCTataaacaccaacaacaacaacaacaacagcagcagcagcgacggctacaacaataacaacaacagcagcgcaaATTTGGCTCCAGGCTGGCGTCGACtaaccaacaacaatgaagTGGCCTACATAAGTCCAACTGGCAAAACACTACGCACACAATTCCAAATCAAGGACTATCTGCTAACACAGGGTACCTGCAAGTGCGGCCTGCCGTGTCCGCTGCGGCCGGaatacttttttgattttaatgcgCAGTGCCGCAAGTTCCGGTTGCGAGTGCTCAGGGAAAGAGTTGAAGGCGCCAGCTGGAACTATAACGCCAGTAGGAGAGGAGATGGCGGCGACAACAGGCAGCAGGAGGAGAAGGCGGTGTCAGTCTACATGCAACCGTGCGGCCACCTCATTGGTGCTCCTGCAAGGATTAAAGCTGTCGGGCGTCTGGGGTCTGGCGTCGGGCGTCGAGCGTCGAGCGTCGCTCGCTTTACGGTCATTATGACGTTAATGAAATTCAACACCGGCCATGCACCTGTGCACAAGCTTCACACCTGCCCACCACCAATGTGGCAATGTGGCAATGTGGCAAGCGGCATTCTCAGTCGGCTCGTTTGCATGTCGCCCACTGACCAGCGCCACCCCGTTGTACCCGCCCCACTCTCCGGCCGTCTGCACATTTCGCTTTAA
- Protein Sequence
- MAAASAGQQLQQQQQQQQQQQHKLNIVGSAETIAGVLQVNELQQQQQQLNMYKQQQQQQQHQQMLHQQQQQQQQFYQQQQTKFVSRVVTNAAMQQQQQQQQQILPAGLVNGSANMMQATNVAGQRQQQQQQQQQQRQSQHIFVCPAISPQLQQQQQQQQQQQQTKQRQAQIKLPVKSPAATATVAAVHCLPATVASHQMSQNNQHQHQHQHQQQQQLYAKNVAKTNNANHNAINTNNNNNNSSSSDGYNNNNNSSANLAPGWRRLTNNNEVAYISPTGKTLRTQFQIKDYLLTQGTCKCGLPCPLRPEYFFDFNAQCRKFRLRVLRERVEGASWNYNASRRGDGGDNRQQEEKAVSVYMQPCGHLIGAPARIKAVGRLGSGVGRRASSVARFTVIMTLMKFNTGHAPVHKLHTCPPPMWQCGNVASGILSRLVCMSPTDQRHPVVPAPLSGRLHISL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -