Hcon017845.1
Basic Information
- Insect
- Hirtodrosophila confusa
- Gene Symbol
- -
- Assembly
- GCA_035043065.1
- Location
- JAWNNI010000213.1:4341769-4343367[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.3e-17 6.9e-14 51.7 0.0 2 45 363 406 362 406 0.95 2 3 0.074 1.5e+02 2.6 0.0 28 37 436 445 435 450 0.90 3 3 1.7e-20 3.5e-17 62.3 0.0 2 42 472 512 471 514 0.96
Sequence Information
- Coding Sequence
- ATGGGTCACTCGTCCACAATAATGGATATTCAGCGCGTCCTGCTCAGCCAGCAAAGCAACAACCAAAGCTGCGAGGTCCTGCTGGTGGCCAAAGATGGGATCAGTGTGCGCGCCCATCTATTCGTACTGAGCACATGCAGTGATCTGATGCGCAATCTTCTAGTCGATTTACCCATCGGCCAAGAGGCCACTGTTATACTGCCCGACATACGCGGTGAGCTGCTGGAGAGCTtgttatcatttatttatatgggAGAAACCAGTTTGCCGTCTGCCCTGCTCACCGAGTTTCTGGAGGCCATCAACCTATTGGGCATCAAATCGGCCATTAGCTTTGAAACCAATCCCACATCCATAGCCGCCACAAATGTTGTCAGCAACGCTATGGCCATGGAGGCGGCGAAGTCAATTAGTGGCTTGCATATTGCGAATTCAGCGCTCatggaggaggaggaggaggaagagGATGCCAGCGCTATGGTAGGCAAACTAGAAGTTGGTAATTCAGTGCTCGCTGACCAGCAACACCCTCAGGAGCAGGAGGGACGTTCCTTGGAATTTCTTGATGTGTATAGTGATCAGCCAAAAATAACGTATTCCATTGAACACATGGACGGCACAGCGGGTGGAAGTCAGTACATATTGACAGAGAACACGGGTACATTTACCATAACACAATCAACAGGACCAGTTGCTAAATTAGAGGAATCCACAGGGTCAGCTGGTGCCGGTGCTGAGCTGCCGGACGAGGATGCAGATGCTGATGGTACAGACGATCATGATGAATCCGAGTCACACTTAATCGAGGAAGAGTTTACCGCATCAGCTGGTCCCTTATTGGAGATGAGTGCGGAGGCGGATGTGGATGCTGAAATGACCGAAGATGGAATGCAAGAAGCGGATGCTGGAGAGGAGGAAGACGAGGAGGATATGCTGGATGTAAAGCCTCGCAAAGGCCAACTAGATATGAATATGTTAAAAACAAGAGTACGCCAGCGTTTAACGCCCTCAAAGTTCTCAAAGAAATCAATGACGAAACAGCATCAACAATATGCGGCACTAAAAAAGGAAATCAAGGACGATATCAATGATGCCCTGGATCTGGCTGTAGATGCAGTGCTCCATGAGGGGCTCAGTCTGCAAAAGGCCGCCGATCGATACGACATTTCGAAAACCGTATTGTGGCGTCGTGTGCGCTCCAATCCAGCCTACATGAGAATCAAACGCGAAAAGCCTTCGCTTTCAGAGGCCTACGAGCGTTTGAAAAACGGCGACTCGCTGAAAAGCATTAGCCAAGATCTGCGTATACCCATGTCGACGCTACACCGGCACAAGGTGAGGCTTGCGGCACAGGGGCGCCTGCCCGATTTTGTTGCCTGTAGACGGCGGGACACTACTCCGAAGGACGAGCTGCGTGACAAACTGGCCAAGGCGGTGCACGCCTGTATTAACGGTGGCATGTCGCAGAACCATGCCGCTAATCTCTTCGAAATACCCAAGAGCACGCTGTGGCGACACTTGCAGCGCCGTGTGACCGAAGCGGAGCGTAAAGtcaaggagcagcaggaggaaGAAGATGAGGAAGAAGCTCTCGcctaa
- Protein Sequence
- MGHSSTIMDIQRVLLSQQSNNQSCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPIGQEATVILPDIRGELLESLLSFIYMGETSLPSALLTEFLEAINLLGIKSAISFETNPTSIAATNVVSNAMAMEAAKSISGLHIANSALMEEEEEEEDASAMVGKLEVGNSVLADQQHPQEQEGRSLEFLDVYSDQPKITYSIEHMDGTAGGSQYILTENTGTFTITQSTGPVAKLEESTGSAGAGAELPDEDADADGTDDHDESESHLIEEEFTASAGPLLEMSAEADVDAEMTEDGMQEADAGEEEDEEDMLDVKPRKGQLDMNMLKTRVRQRLTPSKFSKKSMTKQHQQYAALKKEIKDDINDALDLAVDAVLHEGLSLQKAADRYDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLRIPMSTLHRHKVRLAAQGRLPDFVACRRRDTTPKDELRDKLAKAVHACINGGMSQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEQQEEEDEEEALA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01570162;
- 90% Identity
- iTF_00805103;
- 80% Identity
- iTF_00803711;