Halb008819.1
Basic Information
- Insect
- Hirtodrosophila alboralis
- Gene Symbol
- ken1
- Assembly
- GCA_035043045.1
- Location
- JAWNNH010000327.1:23498-25807[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.14 9.4 7.0 8.2 3 23 230 250 228 250 0.96 2 12 0.0006 0.041 14.5 0.7 1 23 256 281 256 281 0.92 3 12 6.3e-05 0.0043 17.5 2.1 1 23 288 313 288 313 0.95 4 12 0.00013 0.0087 16.6 2.2 1 23 323 345 323 345 0.98 5 12 0.00023 0.016 15.8 1.8 2 23 353 374 352 374 0.96 6 12 0.0076 0.52 11.0 0.5 1 23 380 402 380 402 0.97 7 12 0.03 2.1 9.1 1.9 1 23 408 431 408 431 0.97 8 12 0.02 1.4 9.7 4.1 1 23 437 459 437 459 0.95 9 12 0.0097 0.67 10.7 2.3 2 23 466 487 465 487 0.96 10 12 0.00018 0.012 16.1 0.8 1 23 575 598 575 598 0.96 11 12 0.01 0.69 10.6 3.1 1 23 604 626 604 626 0.95 12 12 7.1e-05 0.0049 17.4 4.3 3 23 634 654 632 654 0.97
Sequence Information
- Coding Sequence
- ATGAATGAAAGGGGTGAAATCTCCATTAATGCAATATGCCGCACTTGTTTGGCAAATTTACAAGAGATTGCCGTCTATGATTTGTTTGCGGTTCCGGGTCTGGCCAAGAAACTTTGTGTCTGCACTTCACTCTCAGCGGAACAACAGGATGGTTTCCCGAAAAATCTTTGTTCCAATTGTTATACCAAACTAAACGATTTACATGATTTTCAGAAGCAATGTGTGGACTCGGTGCAAAAGTTAAAGGATATGTTGGTTAACAATTACTTTAGTAATCGTATTGATAATTTCGATGTGATGAATGTTGTTGCAGCACAGGATGAAGATGTGCCTATTGAGGACGAGGACCGCATTAACTTTGATCCACttctaaatacaaaaatagaaatattggACAATGAGGAGgatgtttttaaaatgatcGAAAATGTCGACAAAGAAGTGGACATTTCCGCAAGTGATAAAGACGATAATGAGGCGAATAGCAGCGACTCCGACGACACTATGCCCTTAGCACAATTGCGGATTATTACCAgggcaacaaaagcaaaggaCAATGAACATTCCAAAAATGATACAGCAGCGGATTCCTTAAAATCTGAATCCGACTACGTTGAAGATGAACACCCCAAAAGGAAACAGAAACGTTTGCGAGTTTTAACAGCTGAGCGGCATAAAACAATCGATTGCCACATTTGccatcaaaaattcaaaaaggcAATTTGCTACGAGGAGCACATGAAGCACCATAATGATATATTGCCATTCCAGTGCGAAGTTGAAGGCTGCAAGAAGGGATTTACGACTGCCGCTGGTCTACGACATCATGTGGATCACGCACACTTGGAGCTCTGTAAACTCCACCCCTGCACAGTTGAAGGATGCGACAAGTCTTTCCCGCGTGCTCGAATGCTCACACATCACTTAAAGAAGAATCATAAAATTATCAAGCCTGAAGTTCGTGATTATCCCTGTTCGGAATGCGACAAAATATTTCGATGTCCAACAGCGcttaaaaaacatatgtataaacataCAGGCGAAGAGTTGCCAATttcttgtaatatttgtaACAAACGATTTCACATAAACAGTGAACTCAGGGATCATCTCTTGCGGCATGCCGGCGTTAAAAATCACGTGTGTCCATACTGTGGCGTGGGCAAAACCACTCGACAGGAATGGAATAAGCATATACTGACGCACACCAAGGAGAAACAGTTTCAGTGTCGTCAGTGTGATCATGCCTCCCACAACAAACAAGCTCTGGCCAATCACGTCAAGGTAGTTCATatgaaaattaagaattttgcaTGTCAATACTGTGGAAAGACATTTGGCAAATCGCATGCTTGCAAGATTCACGAGAGACTCCATACGGGTGAAAATTGTTGCGAGTGCAAGATCTGTGGCAAAATCTTCCTCTTCGAAAAGAGATTGACCAAGCATTTACAGATTCATGAAAAGCGCGATGTACCACCAGCTGCGactgcaaaatcaaaaatcattgAGAGTGAAAAGAAAGCTCCAAATGTAGACAATAATTATACAGATAAAGTTGACTCTAGTCTTATGCCAGCAGTAGCTGATAAGCCAAAGAAACCATATAGAGTTGAGCGTGTCGATATCTCTCAATTGGCGGGCACCGCTGTCAATCCCATATCATCAGTATCGGTGCCTTCCTGGTCGCCACAAGTTAACTTCACAAAGAAGGAAGGCCAGCACATTTGTCCGGGCTGTGGAAGAGGCTTTAATCACATTGGCAACATGAAGCTTCACTATAAGGTAATCCACGAAAAGATCAAGGACTTTGCTTGTCGCTTTTGCCCCAAACGCTTTGGCAAAGCCCAATATCTGCGACATCATGAATATACGCACACTGGCGAGAGGCCGTATGGTTGCAAATTATGCGATAAGCACTTTAGTCATGGTTCATCCTTAAGGAAGCATATGATTTCACACAACAGACCACCAAAGACGCCAAAGGCTCAGAAGGCACCTTCAAAGACTAAAGATCTTCAAAGGCCAAAAATAGAACTGAACAAGCGTCCACCAAAGAATTATGCACAGTATCAAGATCCCGCTGCGGAACGGGCGGCTGCTACGGCTGAATTGCTTGCCCAGCAGCTGGATGAGAGTGAGGCCAAGAGAATGTCGGAAATTAAAACCCGTAAAATTCAAGAAGCCGCCTGTGAGCAACTTCAGAAGCTTCAAAAGGAACAACTCATCGATAAGATATCCTGTGATAGCTTTCACATACAAAGTTCTGAGTCAGGTATTAGTGTGGATGATctcaaattaaatcattaa
- Protein Sequence
- MNERGEISINAICRTCLANLQEIAVYDLFAVPGLAKKLCVCTSLSAEQQDGFPKNLCSNCYTKLNDLHDFQKQCVDSVQKLKDMLVNNYFSNRIDNFDVMNVVAAQDEDVPIEDEDRINFDPLLNTKIEILDNEEDVFKMIENVDKEVDISASDKDDNEANSSDSDDTMPLAQLRIITRATKAKDNEHSKNDTAADSLKSESDYVEDEHPKRKQKRLRVLTAERHKTIDCHICHQKFKKAICYEEHMKHHNDILPFQCEVEGCKKGFTTAAGLRHHVDHAHLELCKLHPCTVEGCDKSFPRARMLTHHLKKNHKIIKPEVRDYPCSECDKIFRCPTALKKHMYKHTGEELPISCNICNKRFHINSELRDHLLRHAGVKNHVCPYCGVGKTTRQEWNKHILTHTKEKQFQCRQCDHASHNKQALANHVKVVHMKIKNFACQYCGKTFGKSHACKIHERLHTGENCCECKICGKIFLFEKRLTKHLQIHEKRDVPPAATAKSKIIESEKKAPNVDNNYTDKVDSSLMPAVADKPKKPYRVERVDISQLAGTAVNPISSVSVPSWSPQVNFTKKEGQHICPGCGRGFNHIGNMKLHYKVIHEKIKDFACRFCPKRFGKAQYLRHHEYTHTGERPYGCKLCDKHFSHGSSLRKHMISHNRPPKTPKAQKAPSKTKDLQRPKIELNKRPPKNYAQYQDPAAERAAATAELLAQQLDESEAKRMSEIKTRKIQEAACEQLQKLQKEQLIDKISCDSFHIQSSESGISVDDLKLNH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00803834; iTF_00805420;
- 90% Identity
- -
- 80% Identity
- -