Halb004068.3


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hirtodrosophila alboralis
Gene Symbol
-
Assembly
GCA_035043045.1
Location
JAWNNH010000142.1:208127-215423[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 9.8e-05 0.0068 16.9 1.6 1 23 342 364 342 364 0.93
2 9 2.4e-08 1.7e-06 28.3 2.6 1 23 370 392 370 392 0.98
3 9 1e-05 0.00069 20.0 0.8 1 23 398 420 398 420 0.98
4 9 7.2e-06 0.00049 20.5 1.0 1 23 426 448 426 448 0.97
5 9 3.5e-05 0.0024 18.3 1.4 2 23 539 560 538 560 0.96
6 9 3.7e-09 2.6e-07 30.8 1.6 1 23 566 588 566 588 0.98
7 9 0.0046 0.31 11.7 0.9 3 23 596 616 594 616 0.97
8 9 0.00012 0.0085 16.6 0.9 1 23 622 644 622 644 0.99
9 9 0.02 1.4 9.7 1.1 1 23 651 675 651 675 0.95

Sequence Information

Coding Sequence
atggCCATAAATTTCTCGGCCTCCTTTGCGGCCTGCATAGCAGCAGGCCTGAAGGTTCCCCGCCAGATAATGTACTGCATCACACAGGACACGGGTCAGCCGTATGTGCTGTACAAGGACTCGCAGGATGCAGAACGCAATGCTGGAGCGATTGGGGCCAGTGCCGCCCAATGGGGCAGCGAAATGTATCCCAACATTCAGCAACAGGCCCAACAACATCTCAAtgcccagcagcaacagcagcaacaacagcagcagcagcagcaacaacagcagcagcaacagcagaatGCAACAGTCGCTGCGcaggcagcagcggcagcagctgctgcgggGCAGCCCCAGAGTCCACCAGGTGGCCAGGAGCCACGGGACAACGGCAGCGGCGATGGACGACAGCAACAGGTGTCGCCCTCATCCAGTCCGTATCCTTCGgtccaacagcagcaacagcaacaacagcgagCAAATGGCAATGCCGATGAGGATGCCATGAATCAGCTTGCTAATCAACAGAACTCCGCACCAAATCCTAACCAAAGCAGCAACGAGCCGCAGCATGCACCCACGAATGGCGGGGAGGCTGGACAGGGTAATCCGCATGTGCAACAAAATGGCGGCGGTCAGCCGCAGGGTGATCCCGGCAACGGCTTCCAGACGCCGGACTATTATGCGCCGCGTCATGGTGCGCCGCAGGGCGGCATGTTGGCGCCACCTGGCTTCCCGCCGTTGCATTATCTGAACAAAAGCGTTCTGCCCATGGAGCAGAACGGTGGTGAATCCTATGCGCTGCCCGAGCTGCTGCCgggccagcaacagcaacagaatgGGGCGCCACCGAATGGTGGCAATCAGAACGGTGGTCAGGCAAACGGTGGCAATGCGGGCAATGAGGGCGCAGCGGCGGCCAATGGCAGCGGAGCCAGCGGTGGCGCCTCATCGGGCACAACGGGGACAACAGGCAGCGGCCGGACGGGGCCAGGACGTCCGCACAAGAATAAGCCGCACAGCGATTTGCGGCTATTCAAGTGCTTAACCTGCGGCAAGGACTTCAAGCAGAAGAGCACATTGTTGCAGCACGATCGGATACACACGGATGCACGGCCGTTTCCGTGCTCCGAATGCGGCAAACGCTTTCGCCAGCAATCGCACCTGACGCAGCATCTCCGCATCCATGCCAACGAAAAGCCATTCACCTGTCCGTATTGTTCGCGCAGTTTCCGGCAGCGCGCGATACTCAATCAGCACATACGCATCCATTCGGGTGAGAAGCCCTTCGCCTGCCCCGAGTGCGGCAAGCACTTTCGCCAGAAGGCCATCCTCAATCAGCATGTGCGCACCCACCAAGATGTCTCACCGCATCTCATCTTCAAGAACGGACCGCATCCGACGCTTTGGCCCTCAGATGTGCCATTCCCAGGCGAAGAGGCTGACTCGAAGGGTGACATTGCCGTTTCCGGCGGTGGCTACCATGATGACGATTCCCAGGGCACACCCGATGGCAGCGGTGGCATGCACTATCCCTCATACTTTAAGGATGGCAAGGGTCAGAAGATTCTACCCGAAGTACTGCAACATATTGGAGTACGGCCAGCAAATATGCCGCTCTACGTCCGCTGTCCCATCTGCGACAAGGAGTTCAAGCAGAAGACCACACTCCTTCAACATGGCTGCATACACATCGAATCGAGGCCGTATCCTTGCCCGGAATGCGGCAAACGCTTCCGTCAGCAGTCGCATCTCACTCAGCATCTGAGGATCCATACGAACGAAAAGCCCTTCGGCTGCATGTACTGTCCACGATTCTTCAGGCAGCGAACTATTCTCAATCAGCACTTGCGCATTCATACCGGGGAGAAGCCCTACAAGTGTGGACAGTGTGGCAAGGACTTCAGACAGAAGGCGATTCTGGATCAGCATACACGCACCCACCAGGTAGGCGATCGTCCTTTCTGCTGTCCAATGCCCAATTGCCGGCGACGCTTTGCCACTGAGAATGAGGTGACCAAGCACATAGACAACCATATGAATCCCAATAGCACCAAGGTGcgacgccagcagcagcagcagcagcaacagcagcagcaggtgcaacagcagcagcaggtgcaacagcagcagcaggtgcagcagcaacaaaacaatgCTGCCGCCTCGGCGGCTGTGGTGGCCAATCATTTGATGAACGATGCCAAGAGCTTGGCGGCACAGCAATtcctcaacaacaacaatcctGCCACGGTGGACAACAAGGCCAATATATTGCCGGTGCGCAGCATGGCGGCGAATGCGGCAAATGCGGCAGCTGCCGCAGTGGCTCAGCAATCTTTGGTCAAGAATGAGCTATACTTTCCACAATGCTATGGCCCGCCCTTCCAGCATCCCTTCCacgcccagcagcagcagcaacagcagccaagtGCGGCACATGCAAATGGTGGACCCACACCGCCTGTGACTGTCACTGTGGCCAATGCGGTGGCACCGGGCGTTGTGGTGCAACAGAATGCGGCCACCTCTcagcagcagcaacagcaacagcaacaacagcaacaacaacagcagcagcagcaacagcctgtggcggcaacaacaacacatcaTCCGCCACCGCCAGCGCCGCCAACAACAGCGCATCATATCACGGCCACGGGTGCGGCAACGGCCACGCCCACTTCAGCACACGCCTCAACGGTGGCAGCCCCACAAACGGTTACCTTATCGATAACATTGCCGCCACCGCCGTCAGCTCATCCGGCGCATCCGGGGCATGCAGGGCATGCGGGGCACGCTGCCACGCCCAATGGCGTTGCGCCcccaccaccgccgccaacCCTCTCGCATGCCATACCcatacacccacacatacaCTCGATATTCGGATCTCTATGA
Protein Sequence
MAINFSASFAACIAAGLKVPRQIMYCITQDTGQPYVLYKDSQDAERNAGAIGASAAQWGSEMYPNIQQQAQQHLNAQQQQQQQQQQQQQQQQQQQQNATVAAQAAAAAAAAGQPQSPPGGQEPRDNGSGDGRQQQVSPSSSPYPSVQQQQQQQQRANGNADEDAMNQLANQQNSAPNPNQSSNEPQHAPTNGGEAGQGNPHVQQNGGGQPQGDPGNGFQTPDYYAPRHGAPQGGMLAPPGFPPLHYLNKSVLPMEQNGGESYALPELLPGQQQQQNGAPPNGGNQNGGQANGGNAGNEGAAAANGSGASGGASSGTTGTTGSGRTGPGRPHKNKPHSDLRLFKCLTCGKDFKQKSTLLQHDRIHTDARPFPCSECGKRFRQQSHLTQHLRIHANEKPFTCPYCSRSFRQRAILNQHIRIHSGEKPFACPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGPHPTLWPSDVPFPGEEADSKGDIAVSGGGYHDDDSQGTPDGSGGMHYPSYFKDGKGQKILPEVLQHIGVRPANMPLYVRCPICDKEFKQKTTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPFGCMYCPRFFRQRTILNQHLRIHTGEKPYKCGQCGKDFRQKAILDQHTRTHQVGDRPFCCPMPNCRRRFATENEVTKHIDNHMNPNSTKVRRQQQQQQQQQQQVQQQQQVQQQQQVQQQQNNAAASAAVVANHLMNDAKSLAAQQFLNNNNPATVDNKANILPVRSMAANAANAAAAAVAQQSLVKNELYFPQCYGPPFQHPFHAQQQQQQQPSAAHANGGPTPPVTVTVANAVAPGVVVQQNAATSQQQQQQQQQQQQQQQQQQQPVAATTTHHPPPPAPPTTAHHITATGAATATPTSAHASTVAAPQTVTLSITLPPPPSAHPAHPGHAGHAGHAATPNGVAPPPPPPTLSHAIPIHPHIHSIFGSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00509959;
90% Identity
iTF_00493805;
80% Identity
-