Hsem016494.1
Basic Information
- Insect
- Hipparchia semele
- Gene Symbol
- -
- Assembly
- GCA_933228835.1
- Location
- CAKOGE010000182.1:966619-976338[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 5.5 2.9e+02 2.6 0.1 2 23 288 310 287 310 0.90 2 19 0.7 37 5.4 0.4 2 23 333 355 332 355 0.95 3 19 5.5e-05 0.0029 18.3 0.2 1 23 359 381 359 381 0.95 4 19 0.19 10 7.2 1.6 1 23 386 409 386 409 0.92 5 19 1 55 4.8 1.1 2 23 417 439 416 439 0.91 6 19 0.00078 0.041 14.7 3.2 1 23 446 469 446 469 0.97 7 19 0.00013 0.0071 17.1 2.6 1 23 475 497 475 497 0.98 8 19 1.6e-05 0.00083 20.0 1.5 1 23 503 525 503 525 0.99 9 19 0.00032 0.017 15.9 3.6 1 23 531 554 531 554 0.97 10 19 0.11 6 7.9 1.1 1 23 619 642 619 642 0.96 11 19 0.17 8.9 7.3 0.0 2 23 669 691 668 691 0.93 12 19 0.28 15 6.6 0.8 2 23 714 735 713 735 0.97 13 19 0.076 4 8.4 0.3 1 23 739 761 739 761 0.97 14 19 0.024 1.3 10.0 3.9 1 23 766 789 766 789 0.96 15 19 0.32 17 6.5 1.3 2 23 797 819 796 819 0.90 16 19 0.00064 0.034 14.9 0.4 2 23 827 849 826 849 0.96 17 19 0.00019 0.01 16.6 3.0 1 23 855 877 855 877 0.97 18 19 2.9e-05 0.0015 19.2 0.9 1 23 883 905 883 905 0.99 19 19 5.2e-05 0.0027 18.4 2.6 1 23 911 934 911 934 0.98
Sequence Information
- Coding Sequence
- AtgggtaaaattaaaaagcctgGTCAAAGCCAGCAGTGCCGATGCTGTTTAAAGGAGTTCGGCCTCAAGGAATTGTGGACGGAGTACTACAACGGGGACGAGCGGGAGGTTTATGGTGAAATGGTGAACGATTGTTTCGCTTTGCCCTGGGAGCCACAGCCCAGCAAGTCTGAGCACATCTGCGAGGACTGCGTCAGCCGCCTGCGCGATGCTGTCAGCTTCAAGAAGGAGATACTCTACGCTGACCAGCTGCTCAACCAACACGCCAGAAATGATTCCAAACACAAAGTGAAGCAAGAGGAAGAGTCAGACTCAGAGGTAGAGACGGAGTACCTCAGTCTGGAGTTTATGGATGATGAAGACAAGGATAAGAGTCTCTTAGaaATCAAAATAGAACAAGAGAGCAAGCTAGAGGCAACGGTCAAAGAGGAAGACCCCTGTCCATCGAAGCGAAGCAAGCGCTACAGCGAGGAGGACTTCAAGAAGTGCATCGAAGCGGTGAGGAGCGGGAAGATGTCGCAGACCAAAGCCGCCTACACCTACCACGTGCCGAGGAAGACCGTCAGCGCTGCGATTGCAAAAATGCCGGTAGAACCCGACCTAGTAGCGAAGCGCCCCAGACATGGGTCTGGCTTGAAGAAGCGCCAGGACAATTTGGACAATCTCATCCGATTCACCAACGCAACCCCTTTCAGAGACGTTCGCAAAGGTTACATCTGCTACTTTTGTCGCTCGGAACATGATGATGCGGCAAATTTAAAAACGCACACAATCGAAGATCATTTGCGAGTTCTAGCAACAGACGTAACGAGGCTTAAAGTTATCTCAGACAAGAGTATTAAACTGGACGTGACGGATTTAACTTGTGAAATATGCGGTGACAGGCTATCGATTTTAGAAAGCGCCTTTGATCATTTAAGAACCGAGCATGGGGTAGATATCCACACGGATTCAAAAGACCATCTCGTTCCATTCAAATTTGATGGGACAAGTCAAAAATGTGTAGTCTGTAACGAAGAGTTTCTCAGCTTCAAGCTATTGAACGATCATATAAATCTGAAGCATTATAAAAACTACGAGTGTGAGACATGCGGGCGCGGTTTTATAAACAAGAGGTCGCTGCAAGCGCACGGGTATATCCACCAAAAAGGGGAGTTCCCCTGCAAGTATTGCCCGGAATTCTTCACGATGCGCATGCGTCGGACACAGCACGAGAGATACGTGCACTTGGACAAGAAGAAACGGAACAAATGCTTGTACTGCGACGAGAAATTCCTGGACAACACGCAGAAGATGAAACACCAAAGCGACGTTCACGGGGTCGCTCGACAGACGTACCAATGCAAATCCTGCGAAAAGATTTACTCCAGCTCCACAACTTTGCATAGACACGTTGAAACGTACCATCTGATGCTGCGGCCGTTTAAGTGTTCCGAATGCGAGGCGACTTTCTCGAAACAACACGTGTTGAATAACCACATGCTGAAACACACGGGAGAGAGAAATTTTCAGTGCGACATTTGTAAAAAGAGATACGGGAGGAAGCAAACTTTAACGGAACATTTGCGGATTCACGCCGGCGATAGGAAGTACAGTTGCGAACGATGCGGCAAGCGGTTCGTGCAAAAGTGCAGTTGGCGTGGACATATGCGGAATAAGCATAAGGAAAGACGGCATCGCGCCCGCACCAGTGAGACGAACTCAAAGCATAACAAAGAAACGGGTGAAATGAGTATCGAAATGAATGAGTTCCATAACAGAATGTTCCCCGAACTAGTCAATTTCGGGAATGACTTGAGTGTCTTACTAGACTGTTCCAATGCAACGCCTATCAGATGTCGAGGTGGTATCGGGTATAAATGCTGCTACTGCAAGGATGAATTCCCTGAAGCCGGAGACCTTAAAGACCACACCACGAGAGCGCATGACAGCAAAACTAGATGCAGTCTAATTAAAGGCAAATACGGAGCTTCCACTCTAGTTAAACTCGACATCACGTCGCTACAATGTAGTATATGCCAATACGATATAGATACACTGGAAAACCTCATAGACCACCTCATAGAAGACCACAAAAAGAACATACACAGGGACATCAAAAACTATATCTTGCCCTTCAAATTCCACGGCGAGGAAATCCGATGCGTCATTTGTTTCACGCTGTTCAACAAATTCAAAGTCCTCCAGGAGCACATGAGCACACACTTCAGGAACTTCATTTGCGACTATTGCAGCTCGGGATTCGTCACACGAACCATACTGTTGAACCACATGAAAGGCCACGAAATGGGTTTCTACAAATGCGACTTCTGTCCAAAAACGTACAACACACACCGGAAGAAGAAAGCCCACGAAAGGCTTGTCCACATACACAGGAACATGTTGAACAAGTGTGGATATTGCAACGAGAAGTTCAATAGGTTCCAAAAGAAGGAGGAACACTTGGTTAGAGTTCACGGGGTTCGCTCCGTGACTATCAAATGCCAGGCGTGCGACAAAATCTTCGTTTCCCAGAGGGCTTTGACGGATCACACGAAAAGGGACCACCTGCTTGAACGTAGGCACAGATGCGAGGTCTGCGACATGAAGTTCTTCAGGCAGAGTGATGTTAGGAAGCACATGGTGAAGCACACGGGGGCGAGGACTTTTCAGTGTGACGTGTGCTTAAAGTCGTATGGCAGGAGGAACACCCTGCGTGAGCACATGCGTATTCACGCGGACGACCGGCGCTTTAAATGCGAATACTGTGGACAGGCCTTTGTCCAGAAGTGTAGTTGGCGAGGTCACATGCGGTCGAAGCATGGCGAGCAATTTTTAAATGTACCCTCATAA
- Protein Sequence
- MGKIKKPGQSQQCRCCLKEFGLKELWTEYYNGDEREVYGEMVNDCFALPWEPQPSKSEHICEDCVSRLRDAVSFKKEILYADQLLNQHARNDSKHKVKQEEESDSEVETEYLSLEFMDDEDKDKSLLEIKIEQESKLEATVKEEDPCPSKRSKRYSEEDFKKCIEAVRSGKMSQTKAAYTYHVPRKTVSAAIAKMPVEPDLVAKRPRHGSGLKKRQDNLDNLIRFTNATPFRDVRKGYICYFCRSEHDDAANLKTHTIEDHLRVLATDVTRLKVISDKSIKLDVTDLTCEICGDRLSILESAFDHLRTEHGVDIHTDSKDHLVPFKFDGTSQKCVVCNEEFLSFKLLNDHINLKHYKNYECETCGRGFINKRSLQAHGYIHQKGEFPCKYCPEFFTMRMRRTQHERYVHLDKKKRNKCLYCDEKFLDNTQKMKHQSDVHGVARQTYQCKSCEKIYSSSTTLHRHVETYHLMLRPFKCSECEATFSKQHVLNNHMLKHTGERNFQCDICKKRYGRKQTLTEHLRIHAGDRKYSCERCGKRFVQKCSWRGHMRNKHKERRHRARTSETNSKHNKETGEMSIEMNEFHNRMFPELVNFGNDLSVLLDCSNATPIRCRGGIGYKCCYCKDEFPEAGDLKDHTTRAHDSKTRCSLIKGKYGASTLVKLDITSLQCSICQYDIDTLENLIDHLIEDHKKNIHRDIKNYILPFKFHGEEIRCVICFTLFNKFKVLQEHMSTHFRNFICDYCSSGFVTRTILLNHMKGHEMGFYKCDFCPKTYNTHRKKKAHERLVHIHRNMLNKCGYCNEKFNRFQKKEEHLVRVHGVRSVTIKCQACDKIFVSQRALTDHTKRDHLLERRHRCEVCDMKFFRQSDVRKHMVKHTGARTFQCDVCLKSYGRRNTLREHMRIHADDRRFKCEYCGQAFVQKCSWRGHMRSKHGEQFLNVPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00801749;
- 90% Identity
- iTF_00801749;
- 80% Identity
- iTF_00801749;