Hsem016494.1
Basic Information
- Insect
- Hipparchia semele
- Gene Symbol
- -
- Assembly
- GCA_933228835.1
- Location
- CAKOGE010000182.1:966619-976338[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-09 7.6e-07 29.1 0.1 1 33 156 188 156 194 0.92 2 2 5.6 1.4e+03 -0.6 0.0 30 43 458 470 437 472 0.85
Sequence Information
- Coding Sequence
- AtgggtaaaattaaaaagcctgGTCAAAGCCAGCAGTGCCGATGCTGTTTAAAGGAGTTCGGCCTCAAGGAATTGTGGACGGAGTACTACAACGGGGACGAGCGGGAGGTTTATGGTGAAATGGTGAACGATTGTTTCGCTTTGCCCTGGGAGCCACAGCCCAGCAAGTCTGAGCACATCTGCGAGGACTGCGTCAGCCGCCTGCGCGATGCTGTCAGCTTCAAGAAGGAGATACTCTACGCTGACCAGCTGCTCAACCAACACGCCAGAAATGATTCCAAACACAAAGTGAAGCAAGAGGAAGAGTCAGACTCAGAGGTAGAGACGGAGTACCTCAGTCTGGAGTTTATGGATGATGAAGACAAGGATAAGAGTCTCTTAGaaATCAAAATAGAACAAGAGAGCAAGCTAGAGGCAACGGTCAAAGAGGAAGACCCCTGTCCATCGAAGCGAAGCAAGCGCTACAGCGAGGAGGACTTCAAGAAGTGCATCGAAGCGGTGAGGAGCGGGAAGATGTCGCAGACCAAAGCCGCCTACACCTACCACGTGCCGAGGAAGACCGTCAGCGCTGCGATTGCAAAAATGCCGGTAGAACCCGACCTAGTAGCGAAGCGCCCCAGACATGGGTCTGGCTTGAAGAAGCGCCAGGACAATTTGGACAATCTCATCCGATTCACCAACGCAACCCCTTTCAGAGACGTTCGCAAAGGTTACATCTGCTACTTTTGTCGCTCGGAACATGATGATGCGGCAAATTTAAAAACGCACACAATCGAAGATCATTTGCGAGTTCTAGCAACAGACGTAACGAGGCTTAAAGTTATCTCAGACAAGAGTATTAAACTGGACGTGACGGATTTAACTTGTGAAATATGCGGTGACAGGCTATCGATTTTAGAAAGCGCCTTTGATCATTTAAGAACCGAGCATGGGGTAGATATCCACACGGATTCAAAAGACCATCTCGTTCCATTCAAATTTGATGGGACAAGTCAAAAATGTGTAGTCTGTAACGAAGAGTTTCTCAGCTTCAAGCTATTGAACGATCATATAAATCTGAAGCATTATAAAAACTACGAGTGTGAGACATGCGGGCGCGGTTTTATAAACAAGAGGTCGCTGCAAGCGCACGGGTATATCCACCAAAAAGGGGAGTTCCCCTGCAAGTATTGCCCGGAATTCTTCACGATGCGCATGCGTCGGACACAGCACGAGAGATACGTGCACTTGGACAAGAAGAAACGGAACAAATGCTTGTACTGCGACGAGAAATTCCTGGACAACACGCAGAAGATGAAACACCAAAGCGACGTTCACGGGGTCGCTCGACAGACGTACCAATGCAAATCCTGCGAAAAGATTTACTCCAGCTCCACAACTTTGCATAGACACGTTGAAACGTACCATCTGATGCTGCGGCCGTTTAAGTGTTCCGAATGCGAGGCGACTTTCTCGAAACAACACGTGTTGAATAACCACATGCTGAAACACACGGGAGAGAGAAATTTTCAGTGCGACATTTGTAAAAAGAGATACGGGAGGAAGCAAACTTTAACGGAACATTTGCGGATTCACGCCGGCGATAGGAAGTACAGTTGCGAACGATGCGGCAAGCGGTTCGTGCAAAAGTGCAGTTGGCGTGGACATATGCGGAATAAGCATAAGGAAAGACGGCATCGCGCCCGCACCAGTGAGACGAACTCAAAGCATAACAAAGAAACGGGTGAAATGAGTATCGAAATGAATGAGTTCCATAACAGAATGTTCCCCGAACTAGTCAATTTCGGGAATGACTTGAGTGTCTTACTAGACTGTTCCAATGCAACGCCTATCAGATGTCGAGGTGGTATCGGGTATAAATGCTGCTACTGCAAGGATGAATTCCCTGAAGCCGGAGACCTTAAAGACCACACCACGAGAGCGCATGACAGCAAAACTAGATGCAGTCTAATTAAAGGCAAATACGGAGCTTCCACTCTAGTTAAACTCGACATCACGTCGCTACAATGTAGTATATGCCAATACGATATAGATACACTGGAAAACCTCATAGACCACCTCATAGAAGACCACAAAAAGAACATACACAGGGACATCAAAAACTATATCTTGCCCTTCAAATTCCACGGCGAGGAAATCCGATGCGTCATTTGTTTCACGCTGTTCAACAAATTCAAAGTCCTCCAGGAGCACATGAGCACACACTTCAGGAACTTCATTTGCGACTATTGCAGCTCGGGATTCGTCACACGAACCATACTGTTGAACCACATGAAAGGCCACGAAATGGGTTTCTACAAATGCGACTTCTGTCCAAAAACGTACAACACACACCGGAAGAAGAAAGCCCACGAAAGGCTTGTCCACATACACAGGAACATGTTGAACAAGTGTGGATATTGCAACGAGAAGTTCAATAGGTTCCAAAAGAAGGAGGAACACTTGGTTAGAGTTCACGGGGTTCGCTCCGTGACTATCAAATGCCAGGCGTGCGACAAAATCTTCGTTTCCCAGAGGGCTTTGACGGATCACACGAAAAGGGACCACCTGCTTGAACGTAGGCACAGATGCGAGGTCTGCGACATGAAGTTCTTCAGGCAGAGTGATGTTAGGAAGCACATGGTGAAGCACACGGGGGCGAGGACTTTTCAGTGTGACGTGTGCTTAAAGTCGTATGGCAGGAGGAACACCCTGCGTGAGCACATGCGTATTCACGCGGACGACCGGCGCTTTAAATGCGAATACTGTGGACAGGCCTTTGTCCAGAAGTGTAGTTGGCGAGGTCACATGCGGTCGAAGCATGGCGAGCAATTTTTAAATGTACCCTCATAA
- Protein Sequence
- MGKIKKPGQSQQCRCCLKEFGLKELWTEYYNGDEREVYGEMVNDCFALPWEPQPSKSEHICEDCVSRLRDAVSFKKEILYADQLLNQHARNDSKHKVKQEEESDSEVETEYLSLEFMDDEDKDKSLLEIKIEQESKLEATVKEEDPCPSKRSKRYSEEDFKKCIEAVRSGKMSQTKAAYTYHVPRKTVSAAIAKMPVEPDLVAKRPRHGSGLKKRQDNLDNLIRFTNATPFRDVRKGYICYFCRSEHDDAANLKTHTIEDHLRVLATDVTRLKVISDKSIKLDVTDLTCEICGDRLSILESAFDHLRTEHGVDIHTDSKDHLVPFKFDGTSQKCVVCNEEFLSFKLLNDHINLKHYKNYECETCGRGFINKRSLQAHGYIHQKGEFPCKYCPEFFTMRMRRTQHERYVHLDKKKRNKCLYCDEKFLDNTQKMKHQSDVHGVARQTYQCKSCEKIYSSSTTLHRHVETYHLMLRPFKCSECEATFSKQHVLNNHMLKHTGERNFQCDICKKRYGRKQTLTEHLRIHAGDRKYSCERCGKRFVQKCSWRGHMRNKHKERRHRARTSETNSKHNKETGEMSIEMNEFHNRMFPELVNFGNDLSVLLDCSNATPIRCRGGIGYKCCYCKDEFPEAGDLKDHTTRAHDSKTRCSLIKGKYGASTLVKLDITSLQCSICQYDIDTLENLIDHLIEDHKKNIHRDIKNYILPFKFHGEEIRCVICFTLFNKFKVLQEHMSTHFRNFICDYCSSGFVTRTILLNHMKGHEMGFYKCDFCPKTYNTHRKKKAHERLVHIHRNMLNKCGYCNEKFNRFQKKEEHLVRVHGVRSVTIKCQACDKIFVSQRALTDHTKRDHLLERRHRCEVCDMKFFRQSDVRKHMVKHTGARTFQCDVCLKSYGRRNTLREHMRIHADDRRFKCEYCGQAFVQKCSWRGHMRSKHGEQFLNVPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00802146;
- 90% Identity
- iTF_00802146;
- 80% Identity
- iTF_00802146;