Hsem016413.1
Basic Information
- Insect
- Hipparchia semele
- Gene Symbol
- -
- Assembly
- GCA_933228835.1
- Location
- CAKOGE010000182.1:616833-628362[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0033 0.17 12.7 2.7 1 23 242 265 242 265 0.94 2 19 0.023 1.2 10.0 0.1 3 23 292 313 290 313 0.96 3 19 0.0074 0.39 11.6 1.1 1 23 335 357 335 357 0.98 4 19 0.099 5.2 8.1 1.4 1 23 407 429 407 429 0.96 5 19 0.26 14 6.7 0.0 2 23 458 480 457 480 0.94 6 19 0.011 0.6 11.0 0.2 2 23 501 523 500 523 0.95 7 19 0.00051 0.027 15.3 2.6 2 23 529 551 528 551 0.95 8 19 0.0099 0.52 11.2 0.6 1 23 556 579 556 579 0.93 9 19 0.84 44 5.1 0.2 2 23 582 604 581 604 0.95 10 19 0.0044 0.23 12.3 1.2 2 22 611 631 610 631 0.95 11 19 0.0094 0.5 11.3 0.4 1 23 688 711 688 711 0.95 12 19 0.63 33 5.5 0.1 3 23 740 761 738 761 0.92 13 19 0.12 6.5 7.7 0.2 3 23 785 807 783 807 0.94 14 19 0.00083 0.044 14.6 0.6 3 20 814 831 812 835 0.90 15 19 0.11 5.7 7.9 0.6 1 23 840 863 840 863 0.97 16 19 0.00056 0.03 15.1 0.2 2 23 869 891 869 891 0.94 17 19 6.2e-05 0.0033 18.1 4.7 1 23 895 918 895 918 0.97 18 19 0.0007 0.037 14.8 0.6 2 23 925 946 924 946 0.96 19 19 0.025 1.3 9.9 2.1 1 23 952 974 952 974 0.97
Sequence Information
- Coding Sequence
- ATGGAGTTTGACGAAATTGTGGTAAAAGAAACCCCGGGGTTGTGCCGGTGCTGCCTATCCGAGGGGTGTTACAAAGATTTGAGCACCGAATACACTTGGATGGAAGAACAAGAAATTTACGCTGATATGCTGTTAGAATGCTTTGATATTAGTATATCCCAACACATGGAAGGTCCCAATGGACCGAACCGACTTATCTGCGAGGTGTGCATCACCCGGCTGCGAGACGCCTGCAACTTCAAGAAGCAGGTTCTGGACTCGGAGAAGAAGTTTGTCGACATGGTGGGGAGAGGGGAGTTTAAAGCTAAAGCAATAGAATACTTGGAGCAGATGAAGTCTGAAGTGACTTTGGAACTGCAACCGGTTGAAGAAACTGAAGTAGAATACTTGGAAGATGACATGGAGTATGATGATGGAAATAGGGAGGACCCAGAACCCACAGTATCCGAGGACATAACAGTAACCGCACTACCCGTTAAGGGCAAACGTGGCCGACCCAAAAAGACGATAGTCAAACCGGAGAAGAAAAAACCAAAAGCCGAGGATAAACCCAAGACTAAGATAGCAAAAGGTCAAAATCGCCAAGAAACGGCCACAGAGGCGCAGAGTAAGTCCTCACTGATCCAAATGTCGGCGACAAAGCGAAACCGCCTAATGAAAAAGAACGCAATAACAGTTCTAGAATGCTCCACTGTGATACCATTCAAATGGCATCGCCACAATTACTTATGCTTCTACTGCCATCGGAGTTTCAAAACTCTACCTCCATTAAAAGAGCATACCAGAAACGATCACAAAACTTCCAGTGTCAAATCTGCCGTATCATACCTTAAAAGGGACGAAAAAGTCAAAATTGACGTTTCGAAAGTTAACTGTCGCATTTGCGACCAAAATTTCGAGCAAGTTAACGCTCTTGTAGACCATCTTAAATCAAGCCATGACGTAAACTTCAATGAAGATAGCGATTTCGGTGTTGTACCTTACGTGATAACCGACCAAGGATACCAATGCGCGTTGTGCAGAAAGGATTTCGAATATTTCATCAAACTAAATCAACACATGAATGATCATTACGGGAACTATGTGTTTGAAAATATCTTTTCAGATTTAAAACGTCGGAAACGCAAAGCCAGCGAATCTTCCTCCATGCGTAGACGGAAAAACCTTCAGTTGCTATTCAATAACACTACGATAATACCGTTCAAATGGCGAGGAAGATATCTTTGCTTCTATTGCAGCAAAGATTTACCGGAATATAACGAATTAAAGAAACATACAAAATCGCACGGAAACTGTTCAACAATGGACCATTCTCTCAAAGTTCTTAAAGGTGGACAGAATATGGAAATTAAAATAGACATATCAGAAATTTCTTGCGAGATTTGTAGCGAAGAATTCCCTGATTTTGAGGGTATTATCAACCATTTATTGGTCAAGCACAAATTGGAATACGACAGAGACGTCGATATGGCTTTGGAAGAGTATAAATTAGTCGATCTTAGTTGTTTAGTCTGCGATGAAAAGTTTACGTACTTCGGCTATTTAGTTTCGCATGTGAACAGTAACCATCCAAAGAACTGTCTTATATGTGACAAATGCAatcaaaaattcaataaaaagaGGGATCTGTTTTCGCATATGAAAAATTATCATAGGGAAGGGGGATACATATGCGATGTATGCCCTCAAAGCTTTAGTTCTCTAAATATTCTGAGGAAACATAGGACAAATAGACATATGACAAGATGCAACATTTGTTTTTTAAGACTACCCTCAGCCGTGCTGAAGCAAAAGCATATGGAAATCGAACATCCGGACGACGGTTCCTTGCAATGTGAAATATGTTACAAAGATTTCCATACGAAACAGGGTTTGAAAATGCATTTACGTAAATGTAAAGGAGATCTTTTTGAAATGGGTGTCAAGAAAGAGGACTATGATATGGATTTGGACAACAATTATGAGGGTACTAAAAGACCGAGCGTGAAACAAATTCGTGAGAACATTGTCACAGTTATAAACATGTCGACAGCCATACCTTTTAACTTCTACAAGAATAAGTTCAACTGTTTCTACTGCTCCCAGGATTTTGCCGATTCAGACTCAATGAGAGAACACACTTTAATCGAGCACCCGGTATGTGATGTGAAAGAGAAATGCATCAGAAAGTGTCGGGAATCGGTTGCGTGCGTTAAAATCGATATATCATCATTAGCTTGCAAGATATGTTTCGAATCCATCAACGATTTGGACAAATTACTCGATCACCTCATTCTTAAACATCAGGCGAATTACGACAAGTCGATTACCACGTGTTTGCAACCGTACAGATTGATAAAAGACCATATGGCATGTCCAAATTGTCCGAACGAGGTGTTCCGATTTTTCGGGACGCTCCTAAAGCATATGAATAACGagcatacaaataataatatcatatgcGTGTATTGTGGACAGACTTTTAGACGCGATCAAAATTTGAGAGTGCACATATGGCGGCATCACAGGGACGGGAGATTCAAATGTTCAATATGCAATGCCGATTGCAACATACCCTCGAGACTGTACATGCATATGGCCAAAGCTCACGGCGTCAAAGCGGCTAAATGCCCAAAGTGCCCTGAAAGTTTCGCCACCCAGTACTTACGGCAGAAGCATTTGATAGAAGCCCACAATTCAGGGCATAAATGCAGTTACTGCGGGAAACTGTTCACAAGAAATTCTTTCATGAGAGATCATATACGCCGCACTCATTTGAAGGAGAAGAATGTCGAATGTTCGATTTGCAGCATGAAGTTCTTCAATAATATACTCTTGCGTCGTCACATGGTGAAGCATAGTGGGGAGAAGAACTTTCATTGTGAAATGTGTGGAGAAAGGTTCTATTGGCGCAAGAGTTTGCGTACTCATGTGGCTAGGCATAATAAGCAGATTAGTCCTATGTAA
- Protein Sequence
- MEFDEIVVKETPGLCRCCLSEGCYKDLSTEYTWMEEQEIYADMLLECFDISISQHMEGPNGPNRLICEVCITRLRDACNFKKQVLDSEKKFVDMVGRGEFKAKAIEYLEQMKSEVTLELQPVEETEVEYLEDDMEYDDGNREDPEPTVSEDITVTALPVKGKRGRPKKTIVKPEKKKPKAEDKPKTKIAKGQNRQETATEAQSKSSLIQMSATKRNRLMKKNAITVLECSTVIPFKWHRHNYLCFYCHRSFKTLPPLKEHTRNDHKTSSVKSAVSYLKRDEKVKIDVSKVNCRICDQNFEQVNALVDHLKSSHDVNFNEDSDFGVVPYVITDQGYQCALCRKDFEYFIKLNQHMNDHYGNYVFENIFSDLKRRKRKASESSSMRRRKNLQLLFNNTTIIPFKWRGRYLCFYCSKDLPEYNELKKHTKSHGNCSTMDHSLKVLKGGQNMEIKIDISEISCEICSEEFPDFEGIINHLLVKHKLEYDRDVDMALEEYKLVDLSCLVCDEKFTYFGYLVSHVNSNHPKNCLICDKCNQKFNKKRDLFSHMKNYHREGGYICDVCPQSFSSLNILRKHRTNRHMTRCNICFLRLPSAVLKQKHMEIEHPDDGSLQCEICYKDFHTKQGLKMHLRKCKGDLFEMGVKKEDYDMDLDNNYEGTKRPSVKQIRENIVTVINMSTAIPFNFYKNKFNCFYCSQDFADSDSMREHTLIEHPVCDVKEKCIRKCRESVACVKIDISSLACKICFESINDLDKLLDHLILKHQANYDKSITTCLQPYRLIKDHMACPNCPNEVFRFFGTLLKHMNNEHTNNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFKCSICNADCNIPSRLYMHMAKAHGVKAAKCPKCPESFATQYLRQKHLIEAHNSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSICSMKFFNNILLRRHMVKHSGEKNFHCEMCGERFYWRKSLRTHVARHNKQISPM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00954873;
- 90% Identity
- iTF_00954873;
- 80% Identity
- -