Hsem016477.1
Basic Information
- Insect
- Hipparchia semele
- Gene Symbol
- -
- Assembly
- GCA_933228835.1
- Location
- CAKOGE010000182.1:854020-858744[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.033 1.7 9.6 2.6 1 21 93 113 93 114 0.96 2 31 0.0041 0.22 12.4 1.8 2 23 186 207 185 207 0.97 3 31 0.029 1.5 9.7 0.1 1 23 211 233 211 233 0.95 4 31 0.38 20 6.2 0.6 1 19 238 256 238 261 0.77 5 31 0.056 3 8.8 0.1 1 23 267 290 267 290 0.94 6 31 0.0083 0.44 11.4 1.9 1 23 297 320 297 320 0.97 7 31 0.00024 0.013 16.3 0.9 1 23 327 349 327 349 0.96 8 31 3.3e-06 0.00017 22.1 4.0 1 23 355 377 355 377 0.98 9 31 0.00054 0.029 15.2 0.3 2 23 381 403 380 403 0.96 10 31 0.0011 0.058 14.2 0.4 1 23 481 503 481 503 0.98 11 31 0.035 1.8 9.5 2.2 1 23 574 596 574 596 0.98 12 31 3.3e-05 0.0018 19.0 0.2 1 23 600 622 600 622 0.97 13 31 0.0088 0.46 11.4 0.2 1 23 656 679 656 679 0.90 14 31 0.15 7.9 7.5 1.9 1 23 686 709 686 709 0.97 15 31 0.012 0.65 10.9 3.9 1 23 716 738 716 738 0.97 16 31 0.032 1.7 9.6 0.4 1 23 784 806 784 806 0.97 17 31 0.53 28 5.8 0.3 2 23 831 853 830 853 0.95 18 31 0.0014 0.073 13.9 0.5 1 23 875 897 875 897 0.99 19 31 0.00027 0.014 16.1 2.4 1 23 901 923 901 923 0.98 20 31 0.0045 0.24 12.3 0.4 1 23 928 951 928 951 0.95 21 31 5.4 2.9e+02 2.6 4.6 1 23 957 980 957 980 0.93 22 31 0.0035 0.19 12.6 4.5 1 23 1028 1050 1028 1050 0.97 23 31 6.9 3.6e+02 2.3 3.3 2 23 1074 1096 1073 1096 0.94 24 31 0.023 1.2 10.0 4.2 3 23 1120 1140 1118 1140 0.96 25 31 0.00025 0.013 16.2 2.3 3 23 1146 1166 1145 1166 0.98 26 31 0.26 14 6.7 6.8 1 23 1176 1199 1176 1199 0.96 27 31 0.0002 0.011 16.5 2.9 1 23 1205 1228 1205 1228 0.96 28 31 0.028 1.5 9.8 1.9 1 23 1234 1257 1234 1257 0.97 29 31 0.00031 0.016 15.9 0.5 1 23 1263 1285 1263 1285 0.98 30 31 2.8e-06 0.00015 22.4 0.9 1 23 1291 1313 1291 1313 0.99 31 31 0.00014 0.0075 17.0 5.4 1 23 1319 1341 1319 1342 0.96
Sequence Information
- Coding Sequence
- atgcaattaataaaaagaaataaagaaaagtgCTATGGACAATGCGGAGGAATTGACACAAGTTTTCTGTTTTTAGGAGAACGCGCCCAAACAGAAAACACGAGATCGATAAAAATAGAGACAACAGAAAATTTGCATTTAGGCCAAACGTTAAAAGTCGAAAAACGACGCTATCAGAGAAGCGCGAGAGCCGAAGCGAGGTTTGTGACGAAGAAGAACGCTGGCGCCTTGCTCGAGTGCTGGTCTCTGTGTCCGTTCAGATGGAAAAGGAACCGGTTCAAATGCGCATACTGCGAGGACCACTTCACCGATTGCACAGAGCTGAGGCGCCATGTCCGCCTGTGTTCGACACAGCACAGCACCAAAGACATATACAGCAAATTCAAAGAAATGACCCTCATCAACGTGGACATCACCGAAGCGTCCTGTAGAATATGCGCTTTGCCATTCCGCGAAGTGAACGAAATGCGTCACCACGCCATCGAACACGGCTATGACTTCGACACCTCACAACCGGATGGGGTGCTTCCTTTTTGCTTGGATAAAGAGTTGTGGCGATGCGTTATATGCCACGAAACGTTCAATAACTTCCTGAAACTCTACGAGCACATGAACACGCACTACCAGCATTATATTTGCGCGACTTGCGGCAAAGGCTACATGACAGCGCCGCGTTTGAGAAAGCATTCGGAGGTGCACATCACGGGAACGTTTCCCTGCGATAAATGCAAGCGTGTCTTTACGATGCGAGCAGCGAGAGATTATCATAAGAGCAACGCCCACGCAAAGGGTCCGAGATACGAATGCCCACAATGTGATATGAGATTCGGAGGCTATTACGAAAGAATGAACCATCTGAACGAAGCGCACAGAGAGAAGGAAGTGGCCTATAAGTGTGCTCATTGCGAGCTGTCCTTCAAAACTAGCGGAAAACGCGCCACGCATGTCAAATCCATACACTTTCCTCAACAACGTAACTTCGCGTGCCCATTTTGCAAGTGGTTTTTCAAAACTGGCTATGAATTAAAGAGGCACATAGTTAAGCATACGGGGGAGAAGAACTTTTGTTGTACGCTGTGCGGGAAGACTTTCCCGAGAAATAGGGCGTTGAGGAAGCATTTGAAAACGCATGAGGATCTGAATTGTAAATGGTGCGGGGTTATGTTCAGCCAAAAAGTGTTGTTGGTGGAGCATTTCCGGACCAACCATCCGGAGATGAGTTCCGTAAATGCGGATTCGGAAGATGTTGTGGTAGGAGTTAAGGGTGTTAAGAAGTTAAAGGAGAATGTGTGCGCCAGACAAATGCTTCGGAGACGACGTGCGAACAACGAACTACCCGAAGAATCTGAGAAGCGCATAGCTAAAACGATGATGCGCAGAAACGCCATGACTATTCTAGAATGCTCAACGGCGTGGGCCTTTCGATGGTTCCAAAGCGCATTTTACTGTTCATATTGCGATTTAAAATTTGTAGAGCCTTTACTCTTGCGTGATCATGTACGTAGCCATTTAAACGACGTCCCAACGAAGAGAATATTCTCGAAACTAACCGAAAATAACATGGTCAAAGTTGATGTTACGAACTTACAATGCAGATTATGCAAACATGCAATCGAAGGTATTGATGCATTGAAATCCCATTTGGTATCGGTCCACGAGAAACCGTTTCATACTGACTTTAATGACGGCGTCCTCCCTTTTAAACTAGAAGCGGATAGGTTCAACTGTCAAAAGTGTCCGCTATATTTCAGAAGCTTCGTCAGAATCAATAAACACATGAACACTCATTACCAGAACTATATTTGCGATGCATGTGGAAAAGGTTTTATATCTAAGTCGAATTTCAGAATACATGTACAATCGCACGAAGTCGGTGCCTTTCCTTGCGGTAGTTGTGACGAAGTTCTACAAACTAGGGTAGCTAGGATGTGCCATAGactaaaagttcacaaaaaaGGCATTAGATACACTTGTCCGAGATGTCCTGAAGTCTTCAGGACGTATTACGGGAGAGCGAAACACTTAGTCGAAGAACATGGTCAACAGATGGGACAATATGAGTGTTCCGCGTGTGGTAAATTGTTCCAGACGAGCTGTAAGCGCGCTACACACATACGGGTTACCCATAATCAACTAGAGAAGAGATACGACTGCCCACATTGCTCGACGTATTTTTTAAGCAAATCCAAACTAAAGAGGCACGTGACCACACACGAAAGACCTGAAAACGAGGAAAGCAGAACGATATCGATTAAATGGAAAAAGAAACCACGACTGGAGGAAAAGGCTAACGCTGCTCTTATTCTAGAATATTCGAACGCAGTCGCATTTCGGTGGACCCGAGGGAAATTTATGTGCGCTTACTGCCCTAAGATTTGCGCAGACGTTAAGGAGGTCCGTGTCCATACGAAAATTCATAATAAACTTGATATCATCGACAAACCAACAGCACGCAACTCTATCCCTTTAAAAGTCGACATAACAAATCTGAAGTGTCGTTTATGTGACAGTGATTTTAACAATATAGATGTTCTAAAGTTGCATTTACTTAGAgaacacaaaataaaattcGATATAGATGCTGGGGACGGGATCACTCCTTTTATTTTAACCGGATCTGTGTACAGATGTGTCATATGCGACTTAATATTTGAGGCGTGCTGGAATTTGTTCACACACATGAATGTGCATTACCAAAGTTTTGTTTGCCAGACTTGTGGGAAAGGCTATTCGGCGAAACATAAGCTGCGCACGCATCAGAGGGGGCACGAATCGGGGGAATTCAAGTGTTCCAAATGTGATTTAGTGTTTAACAATCGAGCACTCAAGGACAGACACGTCCAAGTAGCTCATGGACAAAAGAAGAGATATCGTTGTCCAATATGCGACATGCATTTATATTCTTGTCACTCCCGGTCAATGCATCTCGCTAAGGTACATGATCAGAAAAAAGAGTACAAATGGACGGTCAAGAAATATGTATGGAAACGCCGACGCAGGGTATATAACGACCATAGACATAACGCAGCTATAATTATAGAGTACTCAAACGTATGTCCGTTTAGATGGAAACGAGGCGCATTCACCTGTTCCCATTGTCCAAGAACATTCGGACATTTCGACGACCTTTACAATCATACTCAAGAACATTCTGACCCGTTAATGGCTATGCAGTACGCTCGGCCTTACGACACCATTAAGGTTGAAGTTACTAATCTCAAATGTACCATATGTCACGATAAAATGAATGATTTGGACCACCTAAGAGACCACCTGTACAAGAGTCACCAAAAGCCCATAACCATGGAATTGGATATTGGTGTTACGCCGTTCATTTTGCGGAGCAACGAAATGATTTGCGCGCATTGCTCGCAGTGCTTCTCATTATTTTCTAAACTTAACAGTCATATGAACGAACATTATCCGAATAATATTTGCTCTCACTGTGGAAAGGCCTTCACTGCTGCCCACAGATTAAAAGCGCATCAGCTCACTCACGAATCCGGCCAAACACAAGACCAAACTCATAAATGCACCAAATGCGACGAGTGTTTCGAGACAAAGCTCTTGAGAAATTATCACATCAACAAGAAACACGCCCCAGAAAATCGTTACAGATGCCCATATTGCAACCTGTCGTTCAAACGGTATTCAGAGAGATCGCGACATCTAAAAGAGTTTCATAACCAAAACGTGGAGTACCCTTGCCATTTGTGCCCGGCAATTTTTTCCTTATGCGAGCAAAGGACAAAGCATATCAGAAACGTTCACATAAAGCATAAGCAGTTCCAGTGTGATCGCTGTCCGAGCAAATTCGTTACGGCCGGCCAACTAAAGAGTCATATGGTAAAACATACTGGCTCAAGAGAGTTCCAATGCGGTGTCTGCAAGAAGAGCTATGCAAGGTCTCGGACTTTGAACGAGCATATGAGAATACACAACAATGACAGGAGATTTGTATGCGAGTACTGTAACAACGCTTTCGTCCAAAAGTGCAGTCTCAAGAGTCATATGAAAACTCACCACCCTAATGCGGAGATTTCTAAGATCTCTATTGATTAA
- Protein Sequence
- MQLIKRNKEKCYGQCGGIDTSFLFLGERAQTENTRSIKIETTENLHLGQTLKVEKRRYQRSARAEARFVTKKNAGALLECWSLCPFRWKRNRFKCAYCEDHFTDCTELRRHVRLCSTQHSTKDIYSKFKEMTLINVDITEASCRICALPFREVNEMRHHAIEHGYDFDTSQPDGVLPFCLDKELWRCVICHETFNNFLKLYEHMNTHYQHYICATCGKGYMTAPRLRKHSEVHITGTFPCDKCKRVFTMRAARDYHKSNAHAKGPRYECPQCDMRFGGYYERMNHLNEAHREKEVAYKCAHCELSFKTSGKRATHVKSIHFPQQRNFACPFCKWFFKTGYELKRHIVKHTGEKNFCCTLCGKTFPRNRALRKHLKTHEDLNCKWCGVMFSQKVLLVEHFRTNHPEMSSVNADSEDVVVGVKGVKKLKENVCARQMLRRRRANNELPEESEKRIAKTMMRRNAMTILECSTAWAFRWFQSAFYCSYCDLKFVEPLLLRDHVRSHLNDVPTKRIFSKLTENNMVKVDVTNLQCRLCKHAIEGIDALKSHLVSVHEKPFHTDFNDGVLPFKLEADRFNCQKCPLYFRSFVRINKHMNTHYQNYICDACGKGFISKSNFRIHVQSHEVGAFPCGSCDEVLQTRVARMCHRLKVHKKGIRYTCPRCPEVFRTYYGRAKHLVEEHGQQMGQYECSACGKLFQTSCKRATHIRVTHNQLEKRYDCPHCSTYFLSKSKLKRHVTTHERPENEESRTISIKWKKKPRLEEKANAALILEYSNAVAFRWTRGKFMCAYCPKICADVKEVRVHTKIHNKLDIIDKPTARNSIPLKVDITNLKCRLCDSDFNNIDVLKLHLLREHKIKFDIDAGDGITPFILTGSVYRCVICDLIFEACWNLFTHMNVHYQSFVCQTCGKGYSAKHKLRTHQRGHESGEFKCSKCDLVFNNRALKDRHVQVAHGQKKRYRCPICDMHLYSCHSRSMHLAKVHDQKKEYKWTVKKYVWKRRRRVYNDHRHNAAIIIEYSNVCPFRWKRGAFTCSHCPRTFGHFDDLYNHTQEHSDPLMAMQYARPYDTIKVEVTNLKCTICHDKMNDLDHLRDHLYKSHQKPITMELDIGVTPFILRSNEMICAHCSQCFSLFSKLNSHMNEHYPNNICSHCGKAFTAAHRLKAHQLTHESGQTQDQTHKCTKCDECFETKLLRNYHINKKHAPENRYRCPYCNLSFKRYSERSRHLKEFHNQNVEYPCHLCPAIFSLCEQRTKHIRNVHIKHKQFQCDRCPSKFVTAGQLKSHMVKHTGSREFQCGVCKKSYARSRTLNEHMRIHNNDRRFVCEYCNNAFVQKCSLKSHMKTHHPNAEISKISID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00353339;
- 90% Identity
- -
- 80% Identity
- -