Carc022279.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072076.1:11312958-11319969[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 0.12 9.3 7.8 1.5 1 20 85 104 85 106 0.95 2 32 0.005 0.37 12.2 0.1 2 23 178 199 177 199 0.97 3 32 0.03 2.2 9.7 0.1 1 23 203 225 203 225 0.95 4 32 0.7 52 5.4 1.3 1 17 230 246 230 253 0.77 5 32 0.085 6.3 8.3 0.2 1 23 259 282 259 282 0.94 6 32 0.0042 0.31 12.4 1.1 1 23 289 312 289 312 0.97 7 32 0.00019 0.014 16.6 1.5 1 23 319 341 319 341 0.97 8 32 4.1e-07 3.1e-05 25.0 1.7 1 23 347 369 347 369 0.98 9 32 0.00072 0.053 14.8 0.2 2 23 373 395 372 395 0.96 10 32 0.0013 0.1 14.0 0.8 1 23 479 502 479 502 0.97 11 32 0.55 41 5.7 0.2 2 23 529 551 528 551 0.95 12 32 0.011 0.79 11.1 2.6 1 23 573 595 573 595 0.98 13 32 3.8e-05 0.0028 18.8 0.9 1 23 599 621 599 621 0.98 14 32 0.038 2.8 9.4 0.1 1 23 655 678 655 678 0.90 15 32 0.0045 0.33 12.3 1.0 1 23 685 708 685 708 0.97 16 32 0.0015 0.11 13.8 1.1 1 23 715 737 715 737 0.98 17 32 0.17 12 7.4 1.0 1 23 793 815 793 815 0.97 18 32 0.012 0.89 11.0 0.4 2 23 840 862 839 862 0.96 19 32 0.00087 0.064 14.6 0.2 1 23 884 906 884 906 0.99 20 32 0.0068 0.5 11.8 3.7 1 23 910 932 910 932 0.97 21 32 0.0034 0.25 12.7 0.4 1 23 937 960 937 960 0.92 22 32 2.3 1.7e+02 3.8 1.3 1 23 966 989 966 989 0.92 23 32 0.028 2.1 9.8 0.3 1 23 1037 1059 1037 1059 0.96 24 32 0.87 64 5.1 0.8 2 23 1083 1105 1082 1105 0.92 25 32 0.0024 0.18 13.2 2.0 3 23 1129 1149 1127 1149 0.96 26 32 0.00027 0.02 16.2 2.2 3 23 1155 1175 1154 1175 0.98 27 32 0.097 7.2 8.1 0.9 1 23 1182 1205 1182 1205 0.96 28 32 0.00016 0.012 16.9 1.0 1 23 1211 1234 1211 1234 0.96 29 32 0.02 1.5 10.3 3.8 1 23 1240 1263 1240 1263 0.97 30 32 0.0014 0.11 13.9 1.2 1 23 1269 1291 1269 1291 0.97 31 32 6.3e-06 0.00047 21.3 3.5 1 23 1297 1319 1297 1319 0.99 32 32 0.001 0.076 14.3 4.9 1 23 1325 1347 1325 1348 0.96
Sequence Information
- Coding Sequence
- ATGTTCGTCCAGGTAGTCAGGGAAATCTTCAAGCCCAAAAAACACGAAAACTGGGAACGCGCTCAAACAGAAAACGAGAGCTCTTTAGAAATAGAGACGACAGAAAATTTTCATTTAGGCGACACTTTAAAGATTGAAAAGCGTCGATATCAGAGGAGCGCGAGGGCCGAGGCGAGGTTCATTACCAAGAAGAATGCCAGCGCCTTGCTTGAGTGCTGGTCCCTGTGTCCCTTCCGATGGAAAAGGAACAGGTTCAAATGCGCATACTGCGAGGATCACTTTACGGACTGCACAGAACTGAGGGCCCACGTCAGTCTGTGCGCGACGCAGCACAGCGTTAAAGACATATACAGCAAATTCAAAGAAATGAGCCTCATCAACGTCGATATCACTGACGCTGCGTGTAGAGTATGCGCTGTACCATTCCGCGAGGTCAATGAAATGCGTCAGCATGCGCTAGAGCACGGCTACGACATCGATACGTCACAACCAGATGGCGTACTCCCCTTCTGCTTGGACAAAGAGTCGTGGCGTTGCGTCATATGCGGCGAGATTTTCAACAACTTCCTCAAACTGTACGAACACATGAACGTGCATTACCAGCATTACATATGCGCGACTTGCGGCAAAGGATACATGACGGCTCCTCGCTTGAGGAAGCATTCGGAGGTCCACATTAAAGGGACGTTTCCATGCGACAAATGCAAGAGGGTCTTCACGATGCGCGCTGCTAGGGACTACCACAAGAGTCACGCCCACGCTAAAGGGCCTCGGTACGAGTGTCCCCAGTGCAACATGAGGTTCGGAGGATATTACGAAAGGATGAACCACCTCAACGAAGCACACAGAGAGAAGGAAGTCGCCTACAAATGCGCTCACTGCGAGCTGTCGTTCAAGACCAGCGGGAAGCGTGCAGCTCACGTGAAATCAATCCATTTCCCCCAACAGAGAAACTTCTCTTGTCCGTTCTGCAAATGGTTCTTCAAAACTGGCTATGAATTAAAACGGCATATAGTCAAACACACGGGGGAAAGGAACTTTAGCTGCACGCTTTGCGGGAAGACGTTTCCGAGGAACAGAGCTCTGCGGAAGCATTTGAAAACCCACGAGGACCTCAACTGTAAATGGTGCGGGGTTATGTTCAACCAGAAGGCGCTGCTCGTGGAACATTTTCGAACGGATCATCCGGAGATAAGCGATTTTATGCTTTCCGgtTCCGCACACGCGGATTCGGGAGATGTAGTGATAGGAGTAAAAAGTGTTAGGAAGTTGAAGGAGACGGTCTGCGCGAGGCAAATGCGTCGGAGGCGACGCGCCAACAACGAACTGCCCGAGGAATCCGAGAAACGCATCGCAAAGACGATGATGCGCAAAAACGCGATGACCATTCTGGAATGTTCCACAGCTTGGGCCTTCCGTTGGTTCCAGAGTGCATTCTATTGCTCATATTGCGATGCGAAGTTTGTGGAGCCACATCTCTTGCGTGACCATGTCAATTCCCTCCACTTAAACGATGCCCCAACAAAAAGAATCTTCTCGAAACTAACTGAAAACAACATGGTTAAAGTTGAAGTTACAAACTTACAATGTAGGCTGTGCAATTATCTACTAGACAACATTGATGCCTTGAAAAAACATTTACTGTCAATCCATGAGAAATCATTTCAGGTGGACTTTAATGATGGTGTTCTGCCGTTCAAACTGGAGTCAGATAGATTCAACTGTCAAAAATGTCCGCTACACTTCACAAGTTTTGCCAAAATCAATGAACACATGAACACACACTATCAGAACTATATTTGCGACACGTGCGGGAAGGCTTTCGTGTCTAAATCGCGGTTCAGGACACACGTCCAATCGCACGAGGTCGGGAGCTTCCCTTGCGGTGATTGTGAAGAAGTTCTAGAGACTAGAGCCGCTAGGATGTGCCATAAACTGCGAGTGCACAAGAAAGGTATACGGTACACTTGTGCCAGATGCCCCGAGGTTTTCACGACATACTACGCGAGAGCAAAACACTTGGTAGAAGGGCATGATCAACAGAAGAGGAACTATGAGTGTTCCGCCTGCGGAAAGTCGTTCGAGACGAGCTGCAAGCGAGCAGCGCACGTTCGCGTAACCCACAAACCTTTAGAGAAGAGATACGACTGCCCGCAATGCTCGTGGTACTTTTTAAGCAAATCCAAACTAAAAAGGCACGTGATGACCCACGAAAATGTTAAAAACACAGAAGAGAAAGACAAAGAGGAATCGGACGTTGGAAGGACAGTCGCAATTAAATGGAAAAGGAAACCACGAATAATGGATGAGAAAGCAAACGCTGCCATTATACTTAAACATTCAAACGCAATTCCGTTTAGATGGTTGCGTGGAAAGTTTATGTGCGCTTACTGCCCTAAGATATGCGCGGACCTAAACGAAGTGCGTTACCATTCTAAATCACATAACAAACTTGACATTATTGATAAACCAACAGCGCGAAACTCGGTCCCTTTTAAAGTGGACATAACAAGTTTGAACTGCAGTTTATGCGACAGTAGTCTCAATAATTTAGACGGTCTAAAAACACATCTTAGAACACAGCATAAAGTAGAATTCAACGCTGACTCCGGTGATGGAGTAACACCTTTTATTTTAACCGGCTCTGAGTACAGGTGCGTTATTTGTGACGTGGTTTTCGAAGCGTGCTGGAATCTCTTGACTCACATGAATGTTCATTACCAAAGTTTCATTTGCCACGCGTGCGGGAAGGGCTATTCGGCTAAACATAAGCTGCGTACGCATCAGAAGGAGCACGAATCCGGTGATTTTAAATGCCCCAAATgtagtttagtttttaagaatCGAGTATTAAAGAATAGACACGTTGCTCTGGCACATGGGAGCAAGAAAAGGTATCGCTGTCCAGTATGCGACGTGCAGTTAGATTCTTGCCATTCCCGCTCCGTGCATTTAGCTAAAGTACATGGCCAGAAGAGGGAGTATAAATgGACGGGTTTGAACTTTATATGGAAACGGCGACGCAGGGTATATAACGATCAAAGGCATAATGCCGCCATAATTCTTGAGCACTCTAACGCATGCCCCTTCAGATGGAAGCGTGGTGCCTTCGCGTGCGCCTACTGTCCGAGGACATTCGGGAATTTTGACGATGTCTACAACCATTCGCGGGAGCACCCTGACCGTCTAGCAGCCATGCAATACGCCCGGCCTTATGACACTGTCAAAGTGGACGTTACCGACCTGCAGTGTACGATATGCGACGACAAAATGAGCGATTTGACCCACCTGAAAGAACATCTGATCAATCAACACCAACAGCCGATAGCAAACGATTTGGACATAGGTGTGACCCCGTTCCTCTTGCGGAACAAAGAGATGATTTGCGTCCATTGCTCGCAGCGGTTCTCTCTATTTTCCAACCTCAATAGCCACATGAACGAGCACTATCCCAACAACATTTGTTCCCATTGCGGCAAGTCTTTCGCGGCCGCGCATCGCCTGAAAGCTCATCAGCTCACCCACTCATCCGAAAACCAGACGTACAAATGCATCAAATGCGACGAAGTGTTCGCGACAAAGATCTTGAGGAACTATCACATCAAGTCAAAGCATCTACCGACGAATCCTTACAGATGTCCGTACTGCAATCTATCGTTCAAACGCTATGGGGACAGGGCGCGGCATCTAAAGGAGTTACACGACCAGAAAGTGGAGTACCCTTGCCATTTATGCCCAGCGGTTTTCTGTCTGTCTGACCAGAGGACCAAGCATATACGACACGTTCATATTAAGAATAAGCAATTCCATTGCGACTCTTGCCCTAGTAAATTCGTAACGGCGGGACAGTTAAAAAGCCATATGATCAAACATACAGACTTAAGAGAATTTCAGTGCGATGTTTGCAAGAAATGCTACGCGAGGTCTAGGACGTTGAAGGAGCACATGCGAATACATAACAACGACAGAAGATTCGTTTGCGGATATTGCAATAACGCCTTCATACAGAAGTGCAGTCTCAAGAGTCATTTGAAGACGCACCACCCGAATGTAGAGATGTCTAAGGCATCGATTGATTGA
- Protein Sequence
- MFVQVVREIFKPKKHENWERAQTENESSLEIETTENFHLGDTLKIEKRRYQRSARAEARFITKKNASALLECWSLCPFRWKRNRFKCAYCEDHFTDCTELRAHVSLCATQHSVKDIYSKFKEMSLINVDITDAACRVCAVPFREVNEMRQHALEHGYDIDTSQPDGVLPFCLDKESWRCVICGEIFNNFLKLYEHMNVHYQHYICATCGKGYMTAPRLRKHSEVHIKGTFPCDKCKRVFTMRAARDYHKSHAHAKGPRYECPQCNMRFGGYYERMNHLNEAHREKEVAYKCAHCELSFKTSGKRAAHVKSIHFPQQRNFSCPFCKWFFKTGYELKRHIVKHTGERNFSCTLCGKTFPRNRALRKHLKTHEDLNCKWCGVMFNQKALLVEHFRTDHPEISDFMLSGSAHADSGDVVIGVKSVRKLKETVCARQMRRRRRANNELPEESEKRIAKTMMRKNAMTILECSTAWAFRWFQSAFYCSYCDAKFVEPHLLRDHVNSLHLNDAPTKRIFSKLTENNMVKVEVTNLQCRLCNYLLDNIDALKKHLLSIHEKSFQVDFNDGVLPFKLESDRFNCQKCPLHFTSFAKINEHMNTHYQNYICDTCGKAFVSKSRFRTHVQSHEVGSFPCGDCEEVLETRAARMCHKLRVHKKGIRYTCARCPEVFTTYYARAKHLVEGHDQQKRNYECSACGKSFETSCKRAAHVRVTHKPLEKRYDCPQCSWYFLSKSKLKRHVMTHENVKNTEEKDKEESDVGRTVAIKWKRKPRIMDEKANAAIILKHSNAIPFRWLRGKFMCAYCPKICADLNEVRYHSKSHNKLDIIDKPTARNSVPFKVDITSLNCSLCDSSLNNLDGLKTHLRTQHKVEFNADSGDGVTPFILTGSEYRCVICDVVFEACWNLLTHMNVHYQSFICHACGKGYSAKHKLRTHQKEHESGDFKCPKCSLVFKNRVLKNRHVALAHGSKKRYRCPVCDVQLDSCHSRSVHLAKVHGQKREYKWTGLNFIWKRRRRVYNDQRHNAAIILEHSNACPFRWKRGAFACAYCPRTFGNFDDVYNHSREHPDRLAAMQYARPYDTVKVDVTDLQCTICDDKMSDLTHLKEHLINQHQQPIANDLDIGVTPFLLRNKEMICVHCSQRFSLFSNLNSHMNEHYPNNICSHCGKSFAAAHRLKAHQLTHSSENQTYKCIKCDEVFATKILRNYHIKSKHLPTNPYRCPYCNLSFKRYGDRARHLKELHDQKVEYPCHLCPAVFCLSDQRTKHIRHVHIKNKQFHCDSCPSKFVTAGQLKSHMIKHTDLREFQCDVCKKCYARSRTLKEHMRIHNNDRRFVCGYCNNAFIQKCSLKSHLKTHHPNVEMSKASID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01021508; iTF_00802113;
- 90% Identity
- -
- 80% Identity
- -