Hsem004593.1
Basic Information
- Insect
- Hipparchia semele
- Gene Symbol
- -
- Assembly
- GCA_933228835.1
- Location
- CAKOGE010000023.1:3605938-3608039[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-07 7.1e-05 22.8 0.1 4 38 18 51 15 56 0.89
Sequence Information
- Coding Sequence
- aTGGCGCGAAACAAGGTATTAGTGAGAAAAAGAGGTGGACATTCGGCTGCAAATATGCTTAAGGCCCTCCAGTTGCATAGATCAGGAGAAAGTATCAGAAAATCAGCGAAAATTTATGATATTGCTTACCCTACCTTACGACGCTATGTAGCAAAAAACTTGCATATCAACGTAGAGGACCTTGCTGAGAAAAGATTGCTACCGAATTATGAAAATCATCTTGTTTTTACAGCTGAACAGGAAGATGTTTATAAAGAGTACATAAAGGAGTGCGCTCTAAAATTTTATGGATTGACCCCAAAAGACTGCCGTAAAGTAGCGTATCAAATGGCAAAAATAAACAACGTAACAATCCCAGATAGTTGGGAGCGAGACAAGATGGCGGGTAAAGAGTGGTTTCGCTCATTCAGGAAACGCCACCTTGATCTTTCAATAAAGAAGCCTGAAGCTTGCAGCTTAGCCCGTGCGTCATCATTTAATCGGGAGACAGTCAAGtcattttttgataatttgAAGACAGCAATTAGTCGTCATTCGTCCTTCAGCACTGGTTGCCGTTTGTACAATTTGGACGAAACAGCCACGACGACAGTCCAGCGTCCTCAAAAAGTTGTGGCGCCTAAGGGAAAGCACAATATTGCCAAGATTACCAGTGGAGAAAAGGGAACTTTGATAACCACTTGCGCGATCATATGTGCTTCAGGTCAAGCATTGCCACCCGCGCTTGTTTTCCCGCGAAAAAATTTCAAGGATATAATGTTAACGGGTGCTCCACCAGGTTCTCTTGGATTGGCACATCCATCTGGATGGATGACATCCGTATTATTCGTTGATGTGATGAAGCACTTCATCAAGCATAGCGCTGCTAGTCCAGAGAACCCCGCGCTTTTAATCCTAGACAACCACGAGTCGCATCTGTCAATAGAAGCCTTGGAATTGGCAAAAAGTTCGGGTGTCACTGTTCTTACATTGCATCCTCACACCACTGCCAAGATGCAACCGCTGGATGTTGGGTTAAATGGCCCTTTTAAGATCTATTATAACAGTGCGATCGACTCCTGGATGAATGTTGAAACCCAATCTATTAAATCTGATGACACATTTTGTGAAGACGGAAAAGAAAGTCCATCATTGTTAAACATTGATAACATGGCAGAAACTCCAGCTCAAAATGAACCTACGGAAACTATTACAAAGATACAACCCCAAATACTTCAAAGCTCACCAGCAGCAGGATCATCGAagatttctttaatttcaccCAAGCAATTTATGCCACCACTCAAAGCTGGTCCCCGATCtggtaacaaaaaaataagaaaaagagGAAAGAGCAGGATTGCAACTGACACTCCTGAAAAAAATGAGATTATGGAAAACAAGAGGAAGCGTACAGAAATAAAAGCAAAAGCAAACGATGTGAAACGTGCTGTATTTTCAGATAAAAAGGTGAAAAGAAATGTATCAAAAAAAGAGAAAAGGAAGAAGGTGATCAGTGATGAATCTACTTCTGAAGAAGAACTTGAAGTAGTGCCAGAAGTTAGTCAAACTGATATTAGTGAGGGAGATGGATCTGAAGACGATGAAGAAATCATTGTTGTGAaaggaaattttgaaaaattgccCCGCAAACCAGTTGAAGGTGACTATGTTCTTGTAGTTTTTGacgcaaaaaatattaaagtttattatgTAGCTAAGATTATTGAAGTTGACAAATCCAATATTGGAGTATCATTCATGCGGCTACTTAACAAAGAAAATATGAAATTCCGGATGCCTTTGGAACCCGATTTAGCAAATGTCCAATTAAAGGATATTAAAATGATTCTGCCACTGCCAAAAATTAATGGAACACAGAACCGAAATTCAACTTTCAGCTTTCCGATACGTGTTGCTCCCACTATAAACTTACGTTAG
- Protein Sequence
- MARNKVLVRKRGGHSAANMLKALQLHRSGESIRKSAKIYDIAYPTLRRYVAKNLHINVEDLAEKRLLPNYENHLVFTAEQEDVYKEYIKECALKFYGLTPKDCRKVAYQMAKINNVTIPDSWERDKMAGKEWFRSFRKRHLDLSIKKPEACSLARASSFNRETVKSFFDNLKTAISRHSSFSTGCRLYNLDETATTTVQRPQKVVAPKGKHNIAKITSGEKGTLITTCAIICASGQALPPALVFPRKNFKDIMLTGAPPGSLGLAHPSGWMTSVLFVDVMKHFIKHSAASPENPALLILDNHESHLSIEALELAKSSGVTVLTLHPHTTAKMQPLDVGLNGPFKIYYNSAIDSWMNVETQSIKSDDTFCEDGKESPSLLNIDNMAETPAQNEPTETITKIQPQILQSSPAAGSSKISLISPKQFMPPLKAGPRSGNKKIRKRGKSRIATDTPEKNEIMENKRKRTEIKAKANDVKRAVFSDKKVKRNVSKKEKRKKVISDESTSEEELEVVPEVSQTDISEGDGSEDDEEIIVVKGNFEKLPRKPVEGDYVLVVFDAKNIKVYYVAKIIEVDKSNIGVSFMRLLNKENMKFRMPLEPDLANVQLKDIKMILPLPKINGTQNRNSTFSFPIRVAPTINLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00801786; iTF_00801787; iTF_00801788; iTF_00801789;
- 90% Identity
- -
- 80% Identity
- -