Hjap006658.1
Basic Information
- Insect
- Himalopsyche japonica
- Gene Symbol
- -
- Assembly
- GCA_028555115.1
- Location
- JAHFWJ010000064.1:324724-333872[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.1 7.4 7.7 3.1 1 23 1063 1086 1063 1086 0.92 2 13 1.2 84 4.3 2.4 1 23 1179 1201 1179 1201 0.98 3 13 7.3e-06 0.00052 20.7 0.9 2 23 1204 1225 1203 1225 0.96 4 13 0.00051 0.037 14.9 2.2 1 23 1231 1253 1231 1253 0.98 5 13 0.00028 0.02 15.7 5.5 2 23 1260 1281 1259 1282 0.95 6 13 1.1 75 4.5 4.4 5 23 1295 1313 1292 1313 0.95 7 13 1e-05 0.00071 20.3 1.7 3 23 1320 1341 1319 1341 0.97 8 13 0.11 8 7.6 0.1 2 23 1357 1377 1356 1377 0.97 9 13 0.00039 0.028 15.3 0.8 1 20 1383 1402 1383 1405 0.92 10 13 0.0068 0.49 11.4 0.1 1 23 1413 1435 1413 1435 0.98 11 13 0.011 0.75 10.8 9.4 1 23 1441 1463 1441 1463 0.98 12 13 8.7e-05 0.0062 17.4 1.0 1 23 1469 1493 1469 1493 0.95 13 13 0.00073 0.052 14.4 4.5 1 23 1499 1521 1499 1522 0.96
Sequence Information
- Coding Sequence
- ATGGATCAGTGCCCCGTGTGCACCCTGTACCTGCGCGAGGGCATGTCCCTCGGCGCTCACCTGGACACTCATCCCAAGGACCAGGTAATCAGAGCGCTCTGCAGCATCGCCAAGGGCAGCCGCCGCGGAACTCCATACGACAGCGGTCGATCCGAGGGATCCTTCCGAAGCCGCTCGCGGACGCCCGCCTGCGACTCCGGGCGTCACCGACGCCGCTCGACGCGGGCCTCTCCTGCCGCCGGCGGCTCCTACCGGTCTCTCGAGTCCGCGGACAGCTCGCCCGAAGCGCGCTTCGCAGTCGACGGCGATGGATTTAGTGGAACGCGTCGAACCCTAGAACCCGCTAGGGTGGTCTCGACTCCTTCGTTGCACGCGGACTCGAGCTATTCTGAGAGTCCGGCGGCTAGTGCCCCGCCGCCTGAATCTCTCGAGCGTATTTATCTGGTGTCCAGAAATTCTGCCGAAGCGGACGTTTCCGCTGGGAGCTTCGCCCGGCAACCCGATTACCTTTTTTGTAATGAAAGAAGCGGAGGCGACAGTGTAGAGAGCGCTCCGGTGACCTTTGCCCAGCCTAGAGCATCTGCGAGAACTTCACCGTGTAATACTGCAAAGTCGGCAGCTTCTAAAGATACTCCCGAGGTGGACCCCCCTCCTGCGCTGCACTATGTCACGACTAATTTGAATCCTGTACATTTTGTTCTCCCCGTGTCTCCTTCTTTCTCCCGCCAGCCAGACAATATGGTTGTCACAGTGCCGCCGACTGAGGTGCCCCGCCTCAGTGATACGGCGTCTGCAGCGTTTCCTGGCTGTTTCACTCCTCTCTCTTCGGTATCTTTTCGTCGACCGGGACCCACAGTCGCGCAAGCTCCTCAAATTGTGTACAGAGAATCTTCATATGTGAACGGTAAACAGTTCTTTTCTGCCGTTCCCAATGTTGGGACAGATCACAGGGATATAAATGGCAAGCCGGGTGCAATGTATCGAAACGTCATGGTGTTCAATCCTTTCTCTGGTGCCTCGTGCCTCTACCCGCAGCAACCACCTCAGGAAGTACGTGACATCAGACTTCAAGCTCCGTCTCTTCTACTCGACGGCTCCGCTAGATTAGAAGTGCAAGTCCCGAATGCCATTCTTCCTGAGAAGTCTGTTACCAACGATGACTGCGCCGTTTTGAACCGTAAAAATTTTACCGGCGACGCGGTGAAGCCTAAAGGTTCCGAAAATGTATCCGCAATCGAAGACGTTCCGATGGATTCCGGCCTCTTTGCGGATTGGGGAGACGTTGTGGATTCGGGTGATGCTTCAGCGAAGAACTCCGGAGTAAAAATACTGAGCAATGTTAAAGTTGAATTGCCGGTGCAAAACAGTGGGCCGGTCGTAGAGTCCGTCGACTTGACTCTGGGACGAGATCACAGACCGCTTCCGGATGTCAACGCTCCCGATCTGAATACGGATGAAGCCACCCTGCCAGATTTTATCGACAGAGAGATATGTGATTCTTATGACCGCAGTAGATTTTATCGCCAAGAAACTTTTTGTCCTTCGGACAATTCTAGACGTGCGGTGGAGGTGGAAGCCTCGAATCCTAGGATGATATCGATTCCGAACTCATTTTCTGTAATAAAAAACATTGGTAATCCTAACTTATACAAAGACGGTTCTACAAGTGCCATGCAGCATTCTGACGAGCCAGAACCTTGCGTTTTGCCTGATTTAACATGCAACGAAAAGCCTTCTGTTTCGCCGTGCAGTGATCTCACCAATGATTCAAACGAAGGGTCTTACGATCGAATGGGAAGGATGGCGGAAACGTCGGGACATCCATCCAGAAGAACGGGTCTCGCTACCCGCTTTCCTCCTTCGCAGGCGGTCACGAGGAGCTCTACGAGAAAAAATTTATTCGTCAAAAAACCAAAGAAAATATTGCGCATCAAAAATTTTAATAAAAGGGACACAAAAAAGACATCTGAAAAGGCGACCGCCGATCTCTTAGACTCCGGAGAAGGTACTTCTGACGGAGCAGGTCAGTCTTTGGCTGGACACAGTCGAACCGGCGGCTTCTTCAAGGATATAGATAAAATTAGGAAAAACTCATCCACTCTTTCACTGGTTGCTGTTGAATCTCATTCGCGATCGGGTGGCGAGATGTACATTGAACCTCCCGGGGATGATTCGATGAGTTTCATCATTGATAAAAGGGAACCCTCCGGTGATGAAGAATCTAAAAATTCCTCACACTTTGAAGAAAGCTTTTCTGCGACACCGGCAACTGGCGAAGACATCTTGAAAGCTATCCTCGAGGAGGGCGTACCTTCCCGCGGAGATGGAGATTTGGAATCGGTGCGGCCCGTGAATGTTATCGCTTTCGGTGCCATGTTGGGCGGAGATTCCTCTGCAAACGGTCTGTCCGGCGCATCTTCTAAGGCGACCCAGGAATCTAACCGTTTTACTGGAGAAAAGCGAACCTCCAACGATCTCATACGAGAGTCCTACGCCGAGTTCTTCTCCGCTGACAGGGAATCTTTCGGAGAGGGGGTGGCGGACGGTGTCCAAAAAATAGAAGTGTGCATCGTGGAAGAAGATGTCACCAAGGACGGCGAGTACATTTGGGATGAGACTCCGCAAAAGGAAGAGTTCGCCTTCGCTAATTTCATGCGGAGTGACTATTCCCAGGCCATGTATACGAGGACTGACGGAGGAGACGGAAAAGGAAGCGACCTAGGCGGACCAGAAGGTCAACGGGTACCAGGTCACTTTTCTGCAGAAGACATCTGCGGAGACGATGGCGATTATGTGGAATTGCTTTGCCCTCAGGATGCCTTTCTTGATAGGGATCACAAAGGATCTTTTTTGGAAGCTGTCACTCCAGGCGGATGTCTCGGAACAGGGGCTGACATGGACGGTAGCGGACACGCAGGAGAGGCGGCGGCCTTGAATATACGGACAGATGAGCGCATGCCGCCCAGAGGAGAGCTTTCTGAACAAGATAGTAGCGGTGATGTGGATGCGCCTTGGGCAGGGATGTATCATGATGTCGTCGGAGGCTCTACATCTTATGACTTAATAGCCAGAGAGGCTTGGCCCTCAGACGGATCTGACATAGACATGCCCATCTCTCCGACCAAACATGCTTTCGAGACCGAAGACATCCCGATAGTGGTCGGTGTGAAGCCTCCAGATAAGAATTACAAATGTGCAACGTGCGGAAAAAGTTTCAACTGTCCCAAAGAGAGGCGAGTGCATCGCAGCAAAGAACACCCCGTCGCGGCCGTCCCAGGCGATTCGGCGGATATCAAAAAACTCGTCAGGAAAAGGAGACCGCCTTTGGTGAAAACAAATATCAAAATAAAAAGCGAGAAGGTGGTCAAAAACGAAGGACTCTCCTCTCTCTCCAATTCGAAGATGGATCTCACCGACGAAGGAGTGGTGAACTTGAAATTGGTGGACGGAGTGCTGACACCCGATCTGGACGCCGTCGACAACAAACCTAAACTGGAGCTCGTCAAGGAAGAGACCAAGAAGAGAAAGAGAGAGTATACGTGCGTCACGTGTAAAATGGAATTCTTCACCGACATCTCCTACCATGAGCATCTTAAGATTCACCCCCTGGAGTGTTTGACCTGCGGCAAGTTCTTCAACCGGAGGGCCAACCTCCAACTGCATATCAAAAGACATTTAGGAATAAAAAATTTCAGATGTGACGTGTGTGACAAACGATTCATCACGAAGCAGAAGATGGCGGAGCACCACAACATCCACGTTCTCTGCGCTCCCATAAAGTGCAACATGTGCGACGAAACCTTCCGGCGACACTCTAACATGGTGCAGCATCGAAACCGCCACCACCTCCGCCTGAAGAGGCGTCCCCGAGATCACGTCTGCCACTGCGGGGAAGTCTTCCACTCCAAGAAGAAACTGCTCTGGCATAAAGAGGTGCACGAGGAGAAGCCGAAAGCCTGCCCACACTGCAGCGAGAGATTCGTCCACGCGGCTTCTCTCACTAGACACATGCGCCGAGCGCACAACAATTACTACGTGCCCGATGAGAGGCGGAAGAGggagaacgtccagtgccccgtgtgcggcaacgtctacctcaagtcatccatggacatgcacctgcgcactcatacgggggccaagcccttctcgtgcgtcatctgctctaaaggattctccaccaaatggaacctcaagctgcacagatggacacacgccaaccgctccagcaaacctttcaagtgcgccctctgcaaaggggcgttcgtccgccgggccgactatgtgtcgcacatgaacgctcaccgctccgtgcggccgtacacgtgtaaccattgcggcTGCCGTTTTATCCGAAAGTACAATTGCCAACGACACGTCAGGGAACACGAGACGGCCAAGCGACACGCATGCCCCGtgcccgactgcggcaagaccttccaccgcggatactatctctcggagcacatgcgcgttcactcgggcgcccgccccttctcctgcaacatctgcggcaaagcctcctctaccaaatccaatcacaacaaacatttgAAGATACACCACGCCAAGGAGCCTGTGGCCCGCGAAGATTAA
- Protein Sequence
- MDQCPVCTLYLREGMSLGAHLDTHPKDQVIRALCSIAKGSRRGTPYDSGRSEGSFRSRSRTPACDSGRHRRRSTRASPAAGGSYRSLESADSSPEARFAVDGDGFSGTRRTLEPARVVSTPSLHADSSYSESPAASAPPPESLERIYLVSRNSAEADVSAGSFARQPDYLFCNERSGGDSVESAPVTFAQPRASARTSPCNTAKSAASKDTPEVDPPPALHYVTTNLNPVHFVLPVSPSFSRQPDNMVVTVPPTEVPRLSDTASAAFPGCFTPLSSVSFRRPGPTVAQAPQIVYRESSYVNGKQFFSAVPNVGTDHRDINGKPGAMYRNVMVFNPFSGASCLYPQQPPQEVRDIRLQAPSLLLDGSARLEVQVPNAILPEKSVTNDDCAVLNRKNFTGDAVKPKGSENVSAIEDVPMDSGLFADWGDVVDSGDASAKNSGVKILSNVKVELPVQNSGPVVESVDLTLGRDHRPLPDVNAPDLNTDEATLPDFIDREICDSYDRSRFYRQETFCPSDNSRRAVEVEASNPRMISIPNSFSVIKNIGNPNLYKDGSTSAMQHSDEPEPCVLPDLTCNEKPSVSPCSDLTNDSNEGSYDRMGRMAETSGHPSRRTGLATRFPPSQAVTRSSTRKNLFVKKPKKILRIKNFNKRDTKKTSEKATADLLDSGEGTSDGAGQSLAGHSRTGGFFKDIDKIRKNSSTLSLVAVESHSRSGGEMYIEPPGDDSMSFIIDKREPSGDEESKNSSHFEESFSATPATGEDILKAILEEGVPSRGDGDLESVRPVNVIAFGAMLGGDSSANGLSGASSKATQESNRFTGEKRTSNDLIRESYAEFFSADRESFGEGVADGVQKIEVCIVEEDVTKDGEYIWDETPQKEEFAFANFMRSDYSQAMYTRTDGGDGKGSDLGGPEGQRVPGHFSAEDICGDDGDYVELLCPQDAFLDRDHKGSFLEAVTPGGCLGTGADMDGSGHAGEAAALNIRTDERMPPRGELSEQDSSGDVDAPWAGMYHDVVGGSTSYDLIAREAWPSDGSDIDMPISPTKHAFETEDIPIVVGVKPPDKNYKCATCGKSFNCPKERRVHRSKEHPVAAVPGDSADIKKLVRKRRPPLVKTNIKIKSEKVVKNEGLSSLSNSKMDLTDEGVVNLKLVDGVLTPDLDAVDNKPKLELVKEETKKRKREYTCVTCKMEFFTDISYHEHLKIHPLECLTCGKFFNRRANLQLHIKRHLGIKNFRCDVCDKRFITKQKMAEHHNIHVLCAPIKCNMCDETFRRHSNMVQHRNRHHLRLKRRPRDHVCHCGEVFHSKKKLLWHKEVHEEKPKACPHCSERFVHAASLTRHMRRAHNNYYVPDERRKRENVQCPVCGNVYLKSSMDMHLRTHTGAKPFSCVICSKGFSTKWNLKLHRWTHANRSSKPFKCALCKGAFVRRADYVSHMNAHRSVRPYTCNHCGCRFIRKYNCQRHVREHETAKRHACPVPDCGKTFHRGYYLSEHMRVHSGARPFSCNICGKASSTKSNHNKHLKIHHAKEPVARED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00801238;
- 90% Identity
- iTF_00801238;
- 80% Identity
- -