Hano018611.1
Basic Information
- Insect
- Himalopsyche anomala
- Gene Symbol
- -
- Assembly
- GCA_031772345.1
- Location
- CM062843.1:3874558-3876885[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00039 8.4 6.9 0.0 14 51 208 245 199 248 0.82 2 7 0.036 7.7e+02 0.6 0.1 23 44 245 266 238 274 0.83 3 7 0.0092 2e+02 2.5 0.2 23 51 273 301 271 302 0.84 4 7 3.2e-06 0.07 13.5 0.1 23 44 301 322 297 331 0.87 5 7 0.0013 28 5.2 0.0 23 51 357 385 350 388 0.83 6 7 0.00049 11 6.5 0.1 23 46 385 408 381 416 0.83 7 7 0.0014 31 5.1 0.2 23 48 413 437 409 443 0.84
Sequence Information
- Coding Sequence
- atggacaTCAAGCTAGAACCCGAGGATTATGATTCTGATTCCGAATTACCACCAACGAATCCGCATCAATCTTATAATTCAGTGGGACTGTCTAACGGCAGCAAATGTGCCGGCATTCCAACGCAAAATACGTCCACATACCAAGATGGCCGCGGCGAACACCGTCAGCCGAACGAGGATGCTGAATCAAAGCCGGTTAAAGTTAAAACTGAGGTGGACGAGTGGCAGCAATACAAGGAGAATTTCTACGACAATGTCTTGGATCCGAACGATTACGACGACCCAGATGATGACGACGACGATTACGATGAAGCCGATGTTATCGATGAAGATGCTCTGGAAGAGGCCCAGGAAGAAGAGAAACAGCCTGAAGCACCTGCTCTTACCGTCACCGACACAAGCTCTGAAAAGAAAGACTCCGCAACGGAAACCGCACCGACAGAACCTGTAACAAACTCACCAGAGCAGCTCACGATAAAGGAAGAAGTCATGAGTAGTTTGATATCGGAATTCTGCGAGACTCAATACGACGGAGCAAAAACGCAGCATTACATCGACGCCATCGCTGAAGCGAACGCCGGAGCCGTCGCCGAAGCCGCGGTCAAAGCGGAGACTGAGGCCAAAAATAAAGCAATAGCCGATGCGGAAAAAATCTTCGTGTGCGACATATGCGATTTTAAATGCCGCTATtcgagtaatttaaaaactcaCAAACGGATACACGATAATTATAAACCTTTTAAATGCGACGTCTGCTCTTTCGAATGTCGACATTCGAGTTACCTTAAAACGCATAAACTTATTCATATCAATCTTAAACCGTATACTTGTGACGAATGTCAATTTAGATGCCGGTCGTCaggccatttaaaaaaacacaaaatgatTCACTACGAGGTGAAGCCGTTCACTTGCGATATATGCCTTTTAAAATTCCGCCAGTCGAGTCACCTTAAACGGCATAAAATTATACACGTTGACGACAAGCCGTTTTCGTGCGAGCAGTGCGAATACAAATGCAAACGGATGAGTCATTTGCAGatacataaaataaagcacAACGATATTAAACCGTACACGTGTCTGAcgtgtcaaattaaatttaaacgctCCGGCGAATTAAAACGGCACGAGATGATACACAACAACATCAAACCATTCTCATGCGAAGTGTGCTCATTCAAATGTCGCACGTCTACGAACCTCAAGAAGCACCGGATGATTCATACAGATTTAAAACCGTTCGCTTGCGAATTGTGTCAGTTTAAATGCAGGCAGCTCGGTAATTTGAAAAAGCATCAGTTGATACACAGGTCCAAGGGCGTTGTCGTGGAGATTACGTACGAGAAAGACACGGACGCAGCCGGGTGA
- Protein Sequence
- MDIKLEPEDYDSDSELPPTNPHQSYNSVGLSNGSKCAGIPTQNTSTYQDGRGEHRQPNEDAESKPVKVKTEVDEWQQYKENFYDNVLDPNDYDDPDDDDDDYDEADVIDEDALEEAQEEEKQPEAPALTVTDTSSEKKDSATETAPTEPVTNSPEQLTIKEEVMSSLISEFCETQYDGAKTQHYIDAIAEANAGAVAEAAVKAETEAKNKAIADAEKIFVCDICDFKCRYSSNLKTHKRIHDNYKPFKCDVCSFECRHSSYLKTHKLIHINLKPYTCDECQFRCRSSGHLKKHKMIHYEVKPFTCDICLLKFRQSSHLKRHKIIHVDDKPFSCEQCEYKCKRMSHLQIHKIKHNDIKPYTCLTCQIKFKRSGELKRHEMIHNNIKPFSCEVCSFKCRTSTNLKKHRMIHTDLKPFACELCQFKCRQLGNLKKHQLIHRSKGVVVEITYEKDTDAAG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00799624;
- 90% Identity
- iTF_00799624;
- 80% Identity
- iTF_00799624;