Hami007329.1
Basic Information
- Insect
- Heteropelma amictum
- Gene Symbol
- lrrfip2
- Assembly
- GCA_959613375.1
- Location
- OY390722.1:29293981-29297260[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-114 3.4e-110 368.2 34.3 1 300 29 322 29 322 0.96 2 2 0.038 7.3e+02 -0.7 5.5 193 238 352 396 334 397 0.60
Sequence Information
- Coding Sequence
- atggagtcgACCATAGCGGGACGAAGGCGTAACGCTACGAGGCATTCCGCCGAGGATCAGGCTCTCGACCAGATTGCCAAAGAGGCGGAAGCGAGGCTGGCTGCTCGAAGACAGGCTCGTGCGGAAGCTCGCGAAATTCGTATGCGAGAATTGGAGAGGCAACAGAAAGAAGCGGAGGAGAATGCAGACAGAGTTTACGATATGTGCACGGAAGGAAATAGAACGATGAGAGTAACGCCGGATCCAGTGAGGACATCGCGCATGCTCGcgaattcgaataattttcagtCATCCAGAAGATCATCGGAGGATTCGCTGGAGGATACAGGATTAAGCAGAGATCTCAGATTAGAGCTCAAAGAATTGGAGGAAAAGTTTCGGAAAGCGATGATCGCCAATGCCCAGTTggacaatgaaaaatcatcgtacgCGTATCAGGTCGACTTGCTGAAGGACAAACTCGAGGAGCTCGACGAGACGTCCGCGCAACTTCGACGCGAACTTAGGGAAAAGAATCGAGAGGCCGAGCAATTGAAGCGCGTAAGTCAACGACTCAAGGAAGATTTCGACGTGTGCAGAGCTCAGTTGTTGGAGAGGGACACGCTTATcgagGAAAATGGACTGGTAATAGTGGACGATGAGGGTAGCGAGgatgaaaattctgaaacgtTGAACGGCTCTTGTTGCAAAAAGAGAGTACTAGTCAGCACGGAGGCTGCCGAGCTGTTGCGGAACGCCGGTGAAGGCTCGTTGGACGTTCGATTAAGAAAGTTCGCTTCCGAGAAGAAAGAGTTGCAGGACGAAATTGGCCACTTGAGGTTGGAGCTGGAGGAAGCGAAGAGTCGACTGAGATCGGAAAAATCACCAGGCGGATTTTCAGATTCCGAGGATGTCCAGAGGGAGGCGAACAAATTGCTGGCGGATTACAAGTTCAAATTGCAAAAGGCTGAGCAAGACATGTCGACGTTGCAGGCAACCGTTGCGAGGCTAGAGAGCCAAGTCATACGTTATAAATCGGCGGCCGAAGCTTCGGAAAAAGCCGAGGATGAGCTCAAAgtcgaaaagagaaaattgcAACGAGAGGTGCGCGAGTCGCAGGGTCGCGTCGAGGAGCTCGAAACGGCGAATTCTCACTTGCAGAGACGACTggacaaattaaaaaatgccaAGTCCGCGTTGCTCAAGGAGCTCTGA
- Protein Sequence
- MESTIAGRRRNATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCTEGNRTMRVTPDPVRTSRMLANSNNFQSSRRSSEDSLEDTGLSRDLRLELKELEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELDETSAQLRRELREKNREAEQLKRVSQRLKEDFDVCRAQLLERDTLIEENGLVIVDDEGSEDENSETLNGSCCKKRVLVSTEAAELLRNAGEGSLDVRLRKFASEKKELQDEIGHLRLELEEAKSRLRSEKSPGGFSDSEDVQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRESQGRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01102050;
- 80% Identity
- -