Hami015521.1
Basic Information
- Insect
- Heteropelma amictum
- Gene Symbol
- -
- Assembly
- GCA_959613375.1
- Location
- OY390728.1:5403677-5405398[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.3e-13 1.1e-09 38.0 0.0 2 36 16 51 15 54 0.92
Sequence Information
- Coding Sequence
- ATGCCAAAACTAGTGGAAGGTACAAAGTACACAAAAAGATACAGCGAGGAGAATGTCCGAAAGGCGCTCGAGGCGGTCCAAGAGGACGGCATGTCCGTTCGTAAAGCGGGGCAATTGTTCGGCGTGCCGAGAGCTACTATACAATTTCGTAGGAGTAGCCAATTCAAAAACAAGACGACGTTAGGACCGAGCCCTATTTTAACGGCCGAAGAGGAAGATACGCTTGAAAAGTGGATTCTCGCCAAACACCGCAAAGTATGTCCCAGGCGCAAGGAGGCGATTCAGGCGTCGGTGAAAGACATGCTCGAAGCGAATCCAAGAGCCAATCCCTTCAAGGGTAATAATCCTGGTGACGGTTGGTACAAAGCGTATCTGAAACGCCATCCCAATttaaaaacaacaacaacagccgCAAAAGGTACCGGCAAAGATATACGAAATTGGTTCGCGAATATCGAAGAGTATCTCAACGAAGCTGGCTATTCCAACATACTTCAAGATCCAACGAGAGTTTATCTCGCGGATGAAACGAATTTCGAGCTGTGTCCAAAAAACAACAAAGTCTTAGCACCCAGAGAAGTGAGAAGCGTAGAGGAAATCGAAGGAGCATTACCGAAATCAAACATATCGGTGATGTTCACTTTTTCCGCAGCTGGCGACGAGACACCGCCGATGGTTGTTTATCCTTATAAACGATTACCTACGGATATCGTTAAATCTGTACCGCAAGATTGGGGTATAGGCTGTACGGAAAATGGCTGGATGAAATCTGAAGTTTTTTACGATTACATAAGGAGTGTACTGTTACCATCCTTACAGAAAAAAGGCAtaatttttccaataattttgTATCTCGACGGGCACTGCAATCATGTTACTTATCGAGTCAGCCAGCTCTGCTCCGAGCTGAATATCATTCTCATAAGCTTATATCCAACGATGTCACGTTTTTTAAAACCCGCGGAAATAGCGAATCTCAAGCCTCTTAAAACAAGTTGGAAAAAGGGTGTTTTGgaattccaacgaaaaaatcctCTCGAAGTTATAACCAAGGAAAAATTTGCTCCTCTTCTTTCGTCTCTGCTCAGCTCGGGGGTCACCACAGACACTTCCAAGGGATATCGCATATGGGGGCTTTATCCATGGAATCCGTCAGCTATTGATTACACAAAATGTATCGAGAGAAACAACAAAAAGATTCATCAGGGTACCCTTGAGAGGCGAGAACATCGTCATTCGAACACGTTTATATCGTGGGAggagtatgaaaaaattgtcggtaCGAGAAGGCTCGACACGTTTCGGGGTGTCGACGAAGCTATCGAGGATGATCCCGAGTACCGATACGAGAATTGTTTTACGGAAATGGGTGAATTGACTCTCTATCATCTGTATCGtcaatttcgtacgaaaaaaccAACGCCCAACAATGGTGCTTTGATCAACACCGGTGTTGGCGGATGTGGAGGAGGTGGAGGAGGTGGCGGAGCTGCTGGTGGTGGAGGTGGAGCCGTCGGGGTAAGTGGCGGTGGTAACAACAATAATCCAACTACCAGTAACGTAGAACCGACTATTCACGATGGTCATCATTTCGTCGCTGACGCACATTCAACCGAACATTTAGAATTTCTATATCGTCCGCATCCAGCTGATATACCAGCTGCTACAGCCAATTTTGTACCTGGTACAAGCAACATGTATAATAACAATGCGTTTCCTTGA
- Protein Sequence
- MPKLVEGTKYTKRYSEENVRKALEAVQEDGMSVRKAGQLFGVPRATIQFRRSSQFKNKTTLGPSPILTAEEEDTLEKWILAKHRKVCPRRKEAIQASVKDMLEANPRANPFKGNNPGDGWYKAYLKRHPNLKTTTTAAKGTGKDIRNWFANIEEYLNEAGYSNILQDPTRVYLADETNFELCPKNNKVLAPREVRSVEEIEGALPKSNISVMFTFSAAGDETPPMVVYPYKRLPTDIVKSVPQDWGIGCTENGWMKSEVFYDYIRSVLLPSLQKKGIIFPIILYLDGHCNHVTYRVSQLCSELNIILISLYPTMSRFLKPAEIANLKPLKTSWKKGVLEFQRKNPLEVITKEKFAPLLSSLLSSGVTTDTSKGYRIWGLYPWNPSAIDYTKCIERNNKKIHQGTLERREHRHSNTFISWEEYEKIVGTRRLDTFRGVDEAIEDDPEYRYENCFTEMGELTLYHLYRQFRTKKPTPNNGALINTGVGGCGGGGGGGGAAGGGGGAVGVSGGGNNNNPTTSNVEPTIHDGHHFVADAHSTEHLEFLYRPHPADIPAATANFVPGTSNMYNNNAFP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00050727; iTF_01129261; iTF_01306359; iTF_01057560; iTF_01056717; iTF_01055893; iTF_01100504; iTF_01103467; iTF_01299084; iTF_01508782; iTF_01102705; iTF_01101972; iTF_00439387; iTF_00828699; iTF_01101243; iTF_00265599; iTF_00829408; iTF_00629021; iTF_00263360; iTF_00266378; iTF_00262576;
- 90% Identity
- iTF_01102705;
- 80% Identity
- -