Basic Information

Insect: Heteromyza rotundicornis
Gene Symbol: -
Assembly: GCA_951394025.1
Location: OX596012.1:50182620-50184695[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.4 1.3e+04 -3.0 0.0 24 43 236 255 234 259 0.70

2 12 0.00062 5.5 7.8 0.0 20 43 287 310 283 316 0.90

3 12 0.0014 12 6.6 0.1 21 44 316 339 311 347 0.87

4 12 0.022 2e+02 2.8 0.1 21 44 344 367 338 371 0.86

5 12 0.0033 30 5.4 0.3 22 44 373 395 369 403 0.91

6 12 0.57 5.2e+03 -1.8 0.0 22 46 401 425 396 431 0.78

7 12 0.0074 67 4.3 0.0 21 43 428 450 426 459 0.89

8 12 0.044 4e+02 1.8 0.1 21 44 456 479 450 483 0.87

9 12 0.0002 1.8 9.3 0.6 21 44 484 507 480 515 0.90

10 12 0.15 1.3e+03 0.1 0.1 22 44 513 535 509 543 0.81

11 12 0.0012 10 6.9 0.1 21 51 568 598 560 599 0.87

12 12 0.0084 75 4.1 0.3 22 50 597 624 591 627 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.4	1.3e+04	-3.0	0.0	24	43	236	255	234	259	0.70
2	12	0.00062	5.5	7.8	0.0	20	43	287	310	283	316	0.90
3	12	0.0014	12	6.6	0.1	21	44	316	339	311	347	0.87
4	12	0.022	2e+02	2.8	0.1	21	44	344	367	338	371	0.86
5	12	0.0033	30	5.4	0.3	22	44	373	395	369	403	0.91
6	12	0.57	5.2e+03	-1.8	0.0	22	46	401	425	396	431	0.78
7	12	0.0074	67	4.3	0.0	21	43	428	450	426	459	0.89
8	12	0.044	4e+02	1.8	0.1	21	44	456	479	450	483	0.87
9	12	0.0002	1.8	9.3	0.6	21	44	484	507	480	515	0.90
10	12	0.15	1.3e+03	0.1	0.1	22	44	513	535	509	543	0.81
11	12	0.0012	10	6.9	0.1	21	51	568	598	560	599	0.87
12	12	0.0084	75	4.1	0.3	22	50	597	624	591	627	0.83

Sequence Information

Coding Sequence: atggtCACCTGCCGTTCGTGCATCTGTAAATGCGAGGAATATGTTAAAATACACGAGGAACGAGCTATTTACGATGAAGTTACAACAATTGCAAATCTATTGAATTTTTGCACTAATTTGGAGTTCTCGATCGAGGAGGAGCAGGAGGACTTGCCGGAACAAATCTGCATGAATTGTTTGAAGATTTTGGACGTCTCTTATGCATTCAAGAAGATGGTGCTGGATGCGAACGAAACCCTGCGACAACGACTAGAATTGGACTGCGTGGATGAAGAGACGCTAATATACGAGATAAGCGAGGAGGACAGCAAAGTTATGCATGCAACTGAAGTAGATAATGAGGAGCTGCTGGAATTGGCCAATGCAGCTGAACTGATGCAGGAAATTTATGTTGTTGAATGCTCTTCGCAATTGAACTTGGAGTCGGAAAATGCCATGGAACTATCAGGGAAAGAGTGTGTAAAAAAAGAAGAGCAGATGTCCGAAATATTCACAGACGAGGAAATTCTGGAAGAAGGGTTCTTAAGTGAGGCTGAAGAAGGTGCTGTGATTGAAGAGGCTACAACGACTGCTGCGACTTCGGATTTGGAGGAGAACGAAGAGGGGGCAAATATCAATGGCATTTTGGAATGCAAGTTTTGTAGCGAACAGCTGAACAACAAAAAGGACTTCCAGGATCACCTGATGATGCACGCCAAAACGATGCCCTTTTTATGCACAATCTGCCACGAGGACTTCAAAACAACAGAACAATTCCAAAACCACAACGACCTGCACGATCCCATCAACACCAATGCATGCGAACACTGCGATAAGACCTTTCACTCCGAATCACTCCTTCCAAATCATATCTGTGCTAAGGCTGAGGCACCCTTCGGTTGCGATTTGTGCGGAAAATCCTACAATCAAAGTTCAGCATTGCGGCGACACAAACTCACCCACTCCGGCGAGAAGCCATATTCCTGTGACATTTGTCCGCAATCCTTCCGTTATTCCAACAATTTGGTGGATCACAAACGATGCCATTCGGGCGAAAAGCCCTTTCAATGTTCGGACTGCATCAAAAGCTTCTCCACGTCCACACAGCTCAAACGTCACATGTTGGTTCACCTCGGAGAACGACCGTATAAATGCGAACTGTGCGATCAAAGTTATAGCCAGCAGCGATCCTTGCGTAATCATATGGCTTCGCACACCAACGAGAAAGCCTTTCAGTGCGACGTTTGTGGTAAGAGTATGAGCCAGAAATCGAGCCTGAACAGCCACATGCTGATCCATACGGGAGAGAAGCCGTACCCGTGCGAAATTTGCGGGCACAATTTTCGAGATTTGCGAAATTTAGTGGTGCACAAGCGCGGCCACACGGGCGAAAAGCCCTACAGTTGCGAACATTGCGAGAAGAGTTTCCCCACCTCTACCCAGCTGAAGCGGCACATCCTGAAACACACCGGAGAGCGCCCACATAAATGCGAATTGTGTGAGAAAGCCTACAGCCAGCCACGTTCATTAAGACGGCACATGCTGACCCACTCTGGCGAAAAATCGCATCGCTGCGACATTTGCGGACGCAATTTCCGCTTTTCGAGCAATATGATCGACCACAAGCGCACCCACTTCGGTGAGAAAGCCTATCAGTGTACCATATGCGGCCGGGGTGTCAACAGGAAGGCAGACTACAAGAAACACATGCTCATGCACACTGGCGAAAAACCCCATATGTGCGATATTTGCGGACGTGAGTTTCGATATTCAAGTAACCTGATTGCCCACAAGCGCCTCCATTCGGGGCAGAAACCATTTCAGTGTCCGGACTGCGAGAAGAGCTTCTCCACAGCGAGACTTTTGAAACGGCACGCTATACGTCACACGATGAAAATAAGCAACACCAGACAGACCTCATCACGACAATCGAAACTTCCGGTCGACCAGAAGGTTTCCAAGTCGAACGTCGTGGAGCTCTACTAA
Protein Sequence: MVTCRSCICKCEEYVKIHEERAIYDEVTTIANLLNFCTNLEFSIEEEQEDLPEQICMNCLKILDVSYAFKKMVLDANETLRQRLELDCVDEETLIYEISEEDSKVMHATEVDNEELLELANAAELMQEIYVVECSSQLNLESENAMELSGKECVKKEEQMSEIFTDEEILEEGFLSEAEEGAVIEEATTTAATSDLEENEEGANINGILECKFCSEQLNNKKDFQDHLMMHAKTMPFLCTICHEDFKTTEQFQNHNDLHDPINTNACEHCDKTFHSESLLPNHICAKAEAPFGCDLCGKSYNQSSALRRHKLTHSGEKPYSCDICPQSFRYSNNLVDHKRCHSGEKPFQCSDCIKSFSTSTQLKRHMLVHLGERPYKCELCDQSYSQQRSLRNHMASHTNEKAFQCDVCGKSMSQKSSLNSHMLIHTGEKPYPCEICGHNFRDLRNLVVHKRGHTGEKPYSCEHCEKSFPTSTQLKRHILKHTGERPHKCELCEKAYSQPRSLRRHMLTHSGEKSHRCDICGRNFRFSSNMIDHKRTHFGEKAYQCTICGRGVNRKADYKKHMLMHTGEKPHMCDICGREFRYSSNLIAHKRLHSGQKPFQCPDCEKSFSTARLLKRHAIRHTMKISNTRQTSSRQSKLPVDQKVSKSNVVELY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00797924;
90% Identity: iTF_00797924;
80% Identity: iTF_00797924;