Hrot006181.1
Basic Information
- Insect
- Heteromyza rotundicornis
- Gene Symbol
- Aef1_2
- Assembly
- GCA_951394025.1
- Location
- OX596010.1:83422433-83423379[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0073 66 4.3 0.1 19 46 166 193 162 195 0.88 2 4 1.9e-05 0.17 12.6 0.0 21 46 196 221 192 224 0.92 3 4 0.00053 4.8 8.0 0.0 21 51 224 254 222 255 0.88 4 4 0.00013 1.1 10.0 0.1 21 47 252 278 249 285 0.88
Sequence Information
- Coding Sequence
- ATGCACATTAAGAATCTGCAGCAAGCCCATGCAGCGGCAGCCATGGCCAATTGTGAGATTGTCATAGTGTCATCGCCTCCGAATgctaacaataacaacaacaataacaatagcaacaacaataacaacaataatgaGAGCTCAacacaccaacaacagcagcagcagcagcaacaacagcagcagcagcaacaacatcaacaacaacaaccgcccACTACAACAGAAATATCGTTACCCTTCAATATGCACCTCTCAACGGCCAGCGCCGAAGCACATGCGGCCGCTCAAGCCGCCGCTATGGCCGCAGCTCAGGCCGCTGCCGCACAAGCCGCTGCTGCCGAGCAGCAACACCAGCAAGGCGGCAGCGCCGCTGCTCATCAACATGCCATATTGCAGCAACATCCACTGGCGCATCTGGTGGCCACTGCGGCCCACAGTCCCGCTCTATCGGAGCAACATTACATTGCACGCGATGTCGTTACCAACGGACACAGCGGGCCCGAGAAACCCTTCCTGTGCAACGTCTGCGAACGGCGCTTCCGCCAACTGAGCACGCTCACGAATCACGTCAAGATCCATACCGGCGAGAAACCGTACAAATGCAACATTTGTGATAAGACCTTCCGTCAATCGTCTACGCTCACGAATCACTTGAAGATCCACACCGGCGAGAAGCCATTCACCTGCTCCTACTGTCCCAAGAACTTTCGACAGCTGAGTACGCTCACGAACCACTTGAAGATTCACACAGGTGAGAAGCCCTTCGAATGCGCCGTCTGCAAGAAGCAATTCCGCCAGTCCAGCACCCTCAATAATCACATAAAGATTCACGTCATGGACAAGGTTTACGTACCCGTCAAGGTCAAGACCGAGGAGGAGGAGGGATGA
- Protein Sequence
- MHIKNLQQAHAAAAMANCEIVIVSSPPNANNNNNNNNSNNNNNNNESSTHQQQQQQQQQQQQQQQHQQQQPPTTTEISLPFNMHLSTASAEAHAAAQAAAMAAAQAAAAQAAAAEQQHQQGGSAAAHQHAILQQHPLAHLVATAAHSPALSEQHYIARDVVTNGHSGPEKPFLCNVCERRFRQLSTLTNHVKIHTGEKPYKCNICDKTFRQSSTLTNHLKIHTGEKPFTCSYCPKNFRQLSTLTNHLKIHTGEKPFECAVCKKQFRQSSTLNNHIKIHVMDKVYVPVKVKTEEEEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00798047;
- 90% Identity
- iTF_00798047;
- 80% Identity
- iTF_00798047;