Hrot001924.2
Basic Information
- Insect
- Heteromyza rotundicornis
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_951394025.1
- Location
- OX596010.1:23306380-23311308[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.6e-116 1.3e-111 373.3 26.4 1 299 231 528 231 529 0.91 2 2 0.22 2.9e+03 -2.2 4.1 220 244 557 581 533 602 0.47
Sequence Information
- Coding Sequence
- ATGGACAGCTCCAGTGCTGTGGGCCGGCGTCGCGGCAATTCGCGTGTCAATGCAGAAGATCAGGCGCTGGATCAAATCGCCAAAGAGCCAGGCACTAATGAATGCGACAGCGACGATCTTGTTGGTTTAACACATTCCGAGCAAAATAACAACGTaaacaaaacgacaaaaaaactaaataataacGATGAAATCACCACCAACGACGATGAAGACGAAAAGTTCGACTTCAGTGATAGCGATGTAGAGGAGGAAGAAAGTGACACCGAAACGGAGCCCTATCACAAAAAAGCCAATGTTGATAAGAATTGCAATGATCAGAATGATGGTGCGGCTTTAGGCGATAACGGCGCAATTGTTGCAAGTAAACCAAAGTCCTCACCTGATAGTGCCAATCACCGCCCAACTGATAAACGCAAAGCCACAAAACCGGCCAATTTGCAGTTGAAAGAGACTGTAGTGGGTGCCGACGCCACGCAAACGTCTCCGGATTCATACTGTCCCATTACGCCCCGCCGAATTGTTGACGTTGATACTCTGCCGCGGTCGGCTAGTTCAGCCAAAGTCAATACCGGCGACAAAGTGCAGCATGCAGCTGAAAACGAGGGACAAACGGATGATGATTACTACGATGAAGATGAGCCGGACGATGAAATGCTTGTACAATTTTTGGGAGAAGCTAATCGCATTGCTGAGGCTCGTTTGGCCGCCCGTCGACAGGCACGCGCTGAGGCGCGAGAAATTCGCATGCGCGAATTGGAACGCCAGCAAAAGGAGCAAGAGCACAATGCCGATCGTGTATTTGATATGCACACCGCCTCGGGCATTGATCCTTTGTCGCGGTCGCGACTCGTCACAGGCATTGGCGGCGGCAGCTCACCCATGGGCGGCATGCTCAACTCCACTGTACGCGGCACTTCGATGTCATCGCGACGCAGCAGTGAAGATTCGTTGGAGGAAGAGGGACGCAGCCTAAGAGACATCAGACACGAACTAAAGGATGTCGAGGAACGGTTTCGCAAGGCCATGATCGCCAACGCTCAGCTAGACAATGAGCGCTCGTCGCAGACCTATCAAATTCAGCTGCTAAAAGACAAACTGGAGGAAATGGAAGAGTCGTACGTGCAATTGCAGCGCGAATTCAAAGAGAAGTCGCGCGATTTCAATGCACTCAAACGTAATCTGGACAAACTGAACGAAGAGCTGAAGCTTGTGCAGGGTCAGCTGACCGAACGAGATGCTCTCATTGCCGAACAGGGTTTGGTCATTGTGGCCGTGGAAAACGAGGACGGGTCCGATGCCAAGCGTGCTCTAGTCAGTATGGAGAATGCCCAACTGTTGGGCTCGGTCCAAGGCTCTTTGGATGTTCGACTTAAAAAGTTCAGCGAAGAGAAGCAACAACTGCACCATGAGGTCCAACAGCTGCAGGAACAATTAGACAATTACAAAAGTCAGGGCAAAGCTCGAGGCAATTCGCTGAATGGTCCTTTGGGGTCTGATGAGGATTATGAAGCTCAAAGAGAGGCCAACAAAATCATATCAGActacaaatataaattgcaaaagGCTGAACAGGAAATCGCTAGTCTTCAGTCCAGCTTAGCGCGTTCGGAAACGCAAGTAATCCGCTACAAGAGCACTGCGGAAGCTGCCGAgaaagccgaagccgaactcAAAATAGAGCGAAGAAAACTGCAAAGAGAGAACCGTGAGGCCATGGAACGTTTGGAGGAACTGGAGACATCGAACAATCACCTGCTAAAGCGATTAGACAAATTAAAGAATGCGAAGAGTGCGTTGCTCAAGGACCTCTGA
- Protein Sequence
- MDSSSAVGRRRGNSRVNAEDQALDQIAKEPGTNECDSDDLVGLTHSEQNNNVNKTTKKLNNNDEITTNDDEDEKFDFSDSDVEEEESDTETEPYHKKANVDKNCNDQNDGAALGDNGAIVASKPKSSPDSANHRPTDKRKATKPANLQLKETVVGADATQTSPDSYCPITPRRIVDVDTLPRSASSAKVNTGDKVQHAAENEGQTDDDYYDEDEPDDEMLVQFLGEANRIAEARLAARRQARAEAREIRMRELERQQKEQEHNADRVFDMHTASGIDPLSRSRLVTGIGGGSSPMGGMLNSTVRGTSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERSSQTYQIQLLKDKLEEMEESYVQLQREFKEKSRDFNALKRNLDKLNEELKLVQGQLTERDALIAEQGLVIVAVENEDGSDAKRALVSMENAQLLGSVQGSLDVRLKKFSEEKQQLHHEVQQLQEQLDNYKSQGKARGNSLNGPLGSDEDYEAQREANKIISDYKYKLQKAEQEIASLQSSLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -