Hrot008707.2
Basic Information
- Insect
- Heteromyza rotundicornis
- Gene Symbol
- -
- Assembly
- GCA_951394025.1
- Location
- OX596011.1:15121149-15131658[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.8e-11 1.1e-07 32.0 0.0 1 38 547 585 547 590 0.89 2 4 1.5e-13 3.3e-10 40.1 0.0 2 39 602 639 601 642 0.94 3 4 1.8e-17 4e-14 52.6 0.0 1 45 656 701 656 701 0.98 4 4 8.9e-20 2e-16 60.0 0.0 1 43 708 751 708 753 0.96
Sequence Information
- Coding Sequence
- ATGCCCAGCACAAGTGGGTGGTGGGGTGGTTTGAGTGGTGATGACGAGCTATTTGGCAATGGACGACTGGGTCTTCTTCGCACAGCCGAACAGTTGAAAATAAAGGGTCTCTGCGAAACAGCTGAGAACGCCGATGATCTCAACGACGCGGCCATAGCGACAATCACCGTTTCGGAGAACATACAACAGACGGTTGTAGGCAACATTGTCACAGCTACGGTATCGCCGGGTCAACCCTCACCCAATACAcaacaccagcaacaacaacagcagcagcagcagcaacaacaacagcagcagcaacaacagcagcaacaacaccaacagcaacaacaacagcttgCAAATGCAGCAGTGCTAACACAACACGGCCTAGCCAACGTAAATGCTGCCAACGCACAGCAATtagccgcagcagcagcagccggtGGTCAATTAGTTGTTGCCGCCCCAGccacacaacaacagcaaatcgCACGAAAATCACGTGTACGCAAGCGCTCCAAATCACCAGATctacagcagcagcatcaccAGCAACACCCTCAAGCGATTCtaatacaaaatcaaaatcaagcGGCCATCGTTAGCCTACAGCAGACCTCCTCCGGCAGTTATATACCCGTGTCCGGTGTACATACCGTAACCACCAGCATCGCCGGACAACAGCAAATCAGCACCGTTAGCGACAACGATTCGGACTCGGAGAAACCGACGTTGCATAAGATCTGCAAGACCGAAAACGCGTCCGCATCGCCAGCATCCACTTCATCCGGGTCGGCATCGAATAATGCCGGTGGCGTAACCGCCGTAACAGCACCGGGTTCCGCGATCGTCACACAAATTGTAGTAGCACGCgacgttaaagaaaaaaatatgactaGTTTAGGAATGGGCATGAACGGCGGCATCTTGGGCGTCCCAATGGGATTCCTGGATTTCGCACCCGAACCACCAGCACCATCAGCCACGCCCGTCACCGTTACGGAACATGTGGACCTGTCCTGCAATCCCAGCACTGATACGCGTGATTTATCAAATCCCACCGAACCGCTCGATATCGACAATCACTTGGCCCAGCACATGATTCAACGGCTCGATCAATCTCCAATGCACACCATGCATCATCAAACAGGCGACGAAAGTAATTCGAATTTGGTGCAGCACATCAAAAGCGAAGTGATTGAGGCGaaacatcaacagcaacagcagcagcaacaacaacagcagcagcaacaccaTCAATCACAGCAACATCAATTGCACGCTCAGCAAATACAAGTGCAAGGACAATCTCAACAGCAACATCAgcaccagcagcaacaacaagcacagcagcagcaacaacaacaaacacaccaacaacaccagcaacaCCAGACTCATTCCGAATTGTCCGCTGCGACTGTTATGGAGATTGATCCGAgccaaattaaaaacgaacCGGGCATGATAATAACGCCTGAGATTGTGAATATGATGACCACTGGGCATATGGataTGTATAACTCCGATACGAGCGAGGACTCAATGATGATCGCTAACGGTTCACCGAACGATCAAAATGAGCCGCATTACACCAATTTGGACCAACAACATGGCGATATCAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAATATGAGCCTGACGAAAGCCTCCGTCACATATGGCATCCCATCGACCACATTATGGCAGCGTGCTCATCGCATGGGTATCGAAACGCCTAAAAAGGAAGGCGGCACTAAGTCGTGGAACGAAGATTCTCTCAATAATGCCTTGGAAGCACTACGCTCCGGACAGATATCGGCGAACAAGGCATCGAAAGCCTTCGGTATTCCCTCGTCGACGCTGTATAAGATTGCACGTCGCGAGGGTATTCGCCTGGCGGCGCCCTTCAATGCCGCACCCACAACATGGACTCCAGAAGATTTGGAGCGTGCATTGGAGGCAATACGCGCCGGCCATACGTCCGTCCAGAAAGCGAGTGCTGAATTTGGCATACCGACAGGAACACTTTATGGCCGCTGCAAACGCGAGGGTATCGAACTGTCGCGCTCGAATCCAACACCATGGTCCGAAGACGCCATGAACGAAGCATTGAACTCAGTGCGTGTCGGTCAAATGTCCATTAACCAGGCAGCGATTCACTACAATCTGCCCTACAGTTCACTTTACGGTCGTTTTAAGCGCGGCAAATACGATGTGACCAATACGAGCGGCACATCGATCAACAACACATCGGGCAACACGTCGGGCAGCATCGAGATTATCGAGCACAGCCAAGAGAATTCGTTGCACATGTTTCAGCAACAGTTCCAGTACAGCCCATCGCCtcatcagcagcaacagcaacaacagcagccccaacagcagcagcagcagcagcaacaacatggcggccaacagcagcagcccCAAACACCGCAACATCTGCAGCAACACGTAGTGCACATCCAGACGTCACATCCGGTGCAGCATCACCAGCAGCAACATGGCCAACAGCAACATATCCAACAGCAGGACGTCGTCACATCGAGCAGTCAGGTGCCGCACACAAGTGCTGCCGGACAACAGCAGATCCAACAGATCTATCATCATCATAGCACGCCCGAAAGGAGTTGA
- Protein Sequence
- MPSTSGWWGGLSGDDELFGNGRLGLLRTAEQLKIKGLCETAENADDLNDAAIATITVSENIQQTVVGNIVTATVSPGQPSPNTQHQQQQQQQQQQQQQQQQQQQQQHQQQQQQLANAAVLTQHGLANVNAANAQQLAAAAAAGGQLVVAAPATQQQQIARKSRVRKRSKSPDLQQQHHQQHPQAILIQNQNQAAIVSLQQTSSGSYIPVSGVHTVTTSIAGQQQISTVSDNDSDSEKPTLHKICKTENASASPASTSSGSASNNAGGVTAVTAPGSAIVTQIVVARDVKEKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQHMIQRLDQSPMHTMHHQTGDESNSNLVQHIKSEVIEAKHQQQQQQQQQQQQQHHQSQQHQLHAQQIQVQGQSQQQHQHQQQQQAQQQQQQQTHQQHQQHQTHSELSAATVMEIDPSQIKNEPGMIITPEIVNMMTTGHMDMYNSDTSEDSMMIANGSPNDQNEPHYTNLDQQHGDIKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVTNTSGTSINNTSGNTSGSIEIIEHSQENSLHMFQQQFQYSPSPHQQQQQQQQPQQQQQQQQQHGGQQQQPQTPQHLQQHVVHIQTSHPVQHHQQQHGQQQHIQQQDVVTSSSQVPHTSAAGQQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00979276;
- 90% Identity
- -
- 80% Identity
- -