Hcom002913.1
Basic Information
- Insect
- Hesperia comma
- Gene Symbol
- Kr
- Assembly
- GCA_905404135.1
- Location
- FR990030.1:13906982-13907347[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00018 5.6 7.9 0.1 21 44 6 29 2 33 0.82 2 4 9.5e-05 2.9 8.8 0.0 21 46 34 59 29 61 0.87 3 4 3.7e-05 1.1 10.2 0.0 21 45 62 86 58 90 0.87 4 4 0.00045 14 6.7 0.1 21 45 90 114 86 119 0.85
Sequence Information
- Coding Sequence
- ATGAGGAAACATTCAGGAGAAAAACCATTTACGTGTGAAGTTTGCCACAAAAGATTTAGTCGAAAAAGCAATCTTGTGACTCACATGAGGAATCATTCAGGAGAAAAACCATTTTCGTGTGAAGTTTGCCACAAAAGATTTAATCAAAAAGGCAATCTTGCAAGTCACATGAGGATGCATTCAGGAGAAAAACCATTTACGTGTGTACTTTGCTACAAAAGATTTAGCGAAAAAGGCAATCTTGTAACTCACATGAGGATACATACTGGAGAGAAACCATTTACGTGTGAAGTTTGCCACAAAAGATTTAGTGTAAAAGGCCATCTTGCACGTCACATGAGGATACATTCTGGAGAAAAACTATAA
- Protein Sequence
- MRKHSGEKPFTCEVCHKRFSRKSNLVTHMRNHSGEKPFSCEVCHKRFNQKGNLASHMRMHSGEKPFTCVLCYKRFSEKGNLVTHMRIHTGEKPFTCEVCHKRFSVKGHLARHMRIHSGEKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00795943;
- 90% Identity
- iTF_00795943;
- 80% Identity
- iTF_00795943;