Hcom014223.1
Basic Information
- Insect
- Hesperia comma
- Gene Symbol
- Rfx1
- Assembly
- GCA_905404135.1
- Location
- FR990019.1:18922494-18932482[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.5e-37 6.9e-33 113.9 0.0 3 78 185 260 183 261 0.97 2 3 0.018 2.7e+02 3.0 0.0 69 78 286 295 279 296 0.84 3 3 2 3.1e+04 -3.9 0.0 25 34 640 649 638 654 0.76
Sequence Information
- Coding Sequence
- ATGTCAGAGGCGCCCCGAGACGTAGATAGTGTTGAGGGCCGTCGCGACGCCTCCCGCGGCATGGCGTCGCGTTGGGGCGGGGGGCGCAGCCCGCGGGGGCGCGCGCCGGCAGCCTCCGGAGTTGCCTGGGAGATCTCCATCGAGATGGAGGTGCCTCGATACCGCGCGTTTTTCCCCTCGATGGGGTCGGATTCATTTAATCTGAACACTCTGTGGTCGGTGGTGGGATCCATGGGCGCCAGCGGCGTGCCGGGCCTGCCTGAATGCGAGGGCACCAACGGCGTCAACTACCACGTGCAGTATGTGGAGCCTCAAGACATATACACTCAGGGCCACCAGCCACACATGGAAACCCTCCGCACGTATCCGGTGTACAGCGTGTCGGGCGTGGGGGTGGAGGGTGTGGAGGGTGTGGAGGGCGTGGAGGGCGTGGAGGGCGTGGAGGAGGGCGCGGGCGAGGCGGAGGGCGCGGGTGAGGGCGCGGCGGGGTGGGGGGGCGAGTTCGCGTACCCCGCGGACCTGGCCTCGCCCGCGCCCGCACGCATGCCGCCCGCCACCGTGCAGTGGCTGCTCGACCACTACGAGACCGCTGAGGGCGTATCGCTCCCCCGGTCGACGCTATACGCGCACTACCTGCGGCACTGCGCGGGCGCGCGGCTGGAGCCGGTGAACGCGGCGTCGTTCGGCAAGCTCATCCGCTCGGTGTTCGTGGGGCTGCGCACGCGCCGGCTGGGCACGCGCGGCAACTCCAAGTACCACTACTACGGCATCCGCGCCAAGCCGTCCGCGCCGCCGCCGCCCGCGTCGCCCGCGCCGCATGGTGCGCCGCTACTGCTCAAGAACGATGTCGAGCCGCAGTACCACTACTACGGCATCCGCGCCAAGCCGAGCGCGCCGCCGCCGCCCGCGTCGCCCGCGCCGCATGGACAAGCGCCGCTGCTGCTCAAGAACGATGTCGAGCCGCAGTGCGAGTCGGAGTCGCCTGGAGCGGGGGCGGAGGGCGAGGGCGCGGCGCTGGCGGGCGCGGGCGCGGCGCACCGGCAGTACCTGGGCGCGGTGGCGGCGCCGGAGCCGCCGCCGCTCATCGTCGACGACCTGCCGCCGGACGTGCCCGACGCCGCGCTGCAGGCGCTAAGGGACCATCACCGCGACCACGGCGTAGAGTTCCTGGAAGCGGTGGCAGCGTTGGACATTGGTGCGGTGGAGCGCGCGCGGCGGTCGTTCTGGCGCGGCGGTAGCGGCGGCGCGGGCGGCGCGCTGTGCCGGCGCGCGCTGTGCCGGCTGGCGGCGCGGCGCGGCGTGGCCCGCTGGCTGCGCGCCGCCGACCTGCAGCTGCACCAGCGCGCCGTCGACCTGCTGCTGCCGGATGTACTGCGGCCCATACCGTCGCAGCTCACGCAGGCGATCCGCAACTTCGCGAAGAGCCTGGAGGCGGCGCTGGCGGCGGCGTCGGCGGGCGCGCCCGCGCTGGCGGCGCGCGCGCAGGCGGCGGCCGCGGCGGCGCTGGCGGCCGCGCTGCGCCGCTACACCTCGCTCAACCACCTGGCGCAGGCCGCGCGCGCCGTGCTCGCCAACCACCACCAGATACAGCAGATGGTGGCGGACCTGAACCGCGTGGACTTCCGCGTGGTGCGCGAGCAGGCCGCCTGGGCCTGCGCCTGCGGCACCGCGCCGCACGCCGCGCGCCTCGAGCAGGACTTCAAGGCGACGCTCGGGCGCGGCGCGACGCTGGAACAGTGGGCGGCGTGGCTGGACGGCTGTGTGCGCGCCGCGCTGGCGCCGCACGAGCGCCGCGCGGACTACACGGCGCGCGCGCGCCGCCTGCTGCTCGACTGGTCCTTCTACTCCTCGCTCGTCATCCGCGAGCTCACGCTCAGGTCGGCGGCGTCGTTCGGGTCGTTCCACCTGCTGCGGCTGCTGTACGACGAGTACGTGGCATTCCTGCTGGAGCGCCGCGTGGCCGCCGCGCGCCGCCGCCCGCCCATCGCCGTCATGCAGCGCGCGCTGGACGAAGACGAGGACCTGACGGAGGAGGCGGAGGGCGCGGAGGGCGGCGAGGGCGCAGAGGGCGCGGAGGGCGCGGAGGAGGGCGCGGGGGAGGGCGCGGGCGAGGCTGAAGGCGAGCAGCAGTGGGAGTGGGCTGATGATGACGAGGATGAGGACGAGCCGCTCGAGCATAAGAAGCCTCGGCTTGATGAGTAA
- Protein Sequence
- MSEAPRDVDSVEGRRDASRGMASRWGGGRSPRGRAPAASGVAWEISIEMEVPRYRAFFPSMGSDSFNLNTLWSVVGSMGASGVPGLPECEGTNGVNYHVQYVEPQDIYTQGHQPHMETLRTYPVYSVSGVGVEGVEGVEGVEGVEGVEEGAGEAEGAGEGAAGWGGEFAYPADLASPAPARMPPATVQWLLDHYETAEGVSLPRSTLYAHYLRHCAGARLEPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRAKPSAPPPPASPAPHGAPLLLKNDVEPQYHYYGIRAKPSAPPPPASPAPHGQAPLLLKNDVEPQCESESPGAGAEGEGAALAGAGAAHRQYLGAVAAPEPPPLIVDDLPPDVPDAALQALRDHHRDHGVEFLEAVAALDIGAVERARRSFWRGGSGGAGGALCRRALCRLAARRGVARWLRAADLQLHQRAVDLLLPDVLRPIPSQLTQAIRNFAKSLEAALAAASAGAPALAARAQAAAAAALAAALRRYTSLNHLAQAARAVLANHHQIQQMVADLNRVDFRVVREQAAWACACGTAPHAARLEQDFKATLGRGATLEQWAAWLDGCVRAALAPHERRADYTARARRLLLDWSFYSSLVIRELTLRSAASFGSFHLLRLLYDEYVAFLLERRVAAARRRPPIAVMQRALDEDEDLTEEAEGAEGGEGAEGAEGAEEGAGEGAGEAEGEQQWEWADDDEDEDEPLEHKKPRLDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -