Htar031620.1
Basic Information
- Insect
- Herminia tarsipennalis
- Gene Symbol
- -
- Assembly
- GCA_945859575.2
- Location
- OX243854.1:8224514-8227863[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.5e-05 0.0026 19.2 0.6 1 21 106 126 106 127 0.94 2 18 2.8 2.9e+02 3.2 0.4 3 23 133 153 132 153 0.91 3 18 0.45 47 5.8 1.4 1 23 158 181 158 181 0.96 4 18 0.0075 0.79 11.3 0.5 1 23 186 208 186 208 0.95 5 18 0.00025 0.026 16.0 0.3 1 23 244 267 244 267 0.93 6 18 0.00019 0.02 16.4 1.8 1 23 273 295 273 295 0.98 7 18 5.5 5.7e+02 2.3 0.2 5 23 305 323 303 323 0.93 8 18 9.4 9.8e+02 1.6 0.9 1 23 329 352 329 352 0.79 9 18 0.00027 0.028 15.9 1.2 2 22 478 498 477 501 0.89 10 18 1 1e+02 4.7 0.0 3 23 505 526 504 526 0.95 11 18 0.0026 0.27 12.8 0.4 1 23 531 554 531 554 0.94 12 18 0.0002 0.021 16.3 2.0 2 23 560 581 559 581 0.96 13 18 0.96 1e+02 4.7 1.2 2 20 585 603 585 605 0.91 14 18 3.3e-06 0.00035 21.9 1.0 1 23 631 654 631 654 0.95 15 18 0.0003 0.032 15.7 0.5 1 23 660 682 660 682 0.95 16 18 0.068 7.1 8.3 0.1 1 23 688 710 688 710 0.97 17 18 0.0036 0.37 12.4 0.3 1 23 716 739 716 739 0.94 18 18 0.00028 0.029 15.8 0.9 2 23 746 768 745 768 0.95
Sequence Information
- Coding Sequence
- ATGGACGGTGCACTCCCCAGGGGTATATGCCGGCCGTGTTACGAAGATACCGTAGCGGCTATTACCTTCAGGAACCTATGCACGCAGTCGACGCAGCAATGGGTCGAAGTGACGGCCTACTTCTCCCAAATCCATCCGCCGTCTGAAGACGACAAAGCCTATTTTGTTTTTTGTAGCAACGAAAAAACTGTTATAAAAGACCAAATAGGTAGAGTTCCAACAACAGCAGCTGCTTTAGAAAGACTAAATATGAGATATCAGGCTAAACCGCAGAAAACAAGACGGCAGAAACGCACTCACCATCCGACCGCGGCCTGCAAATGCCCGGATTGTGGTAAAATGTTTTCGATTCCTGATTATTTAAACTACCACTTAAGAAATACTCTTAAACGTGCTTGCACTAGATGTGGTGTAGTTATGTCCAAGAAAAAAATGGCTAGACATATGTCTACGGACCATAATATCATGATGTACAGTTGCACCATCTGCTGCAAGCTGTTTGATAAACCAATTGATATGGAAAATCATTTGAAAGAGACACATAACGAAAACACTTATTGCTGCAGTGTCTGTGGCAACGGTTATTACAACGAGCGGGCTCTGAGAGCGCACATATACGCCCATTCTCTGTTCCATTGTAAATCGTGCAGCCTAAGCTTCGAGAACATAAAATGTTACAAATATCACCAAAAGCAATGCAAAATTGTTGAACAACCAGCTTTCAAAAACTTTACTTGTGATCTCTGCGGTGTTACATACAACAGAAAGCCTTCTTTACGCATCCATATTGTTCAAAAACATCTTAATGTACTGCCTTATGTTTGCTTGACATGTGGTAAAAGAACGTCGACAATTGCCCATTTAAGGTCTCATGAGAAGACTCATACGACTCAGCGGAAGATATTCCAATGTTACTGTGGAGCTCAGCTGCGAACAGAACTTGGCTATCAGCTCCATCAAAGAATACATACCGGAGAACGCCCGTACGAGTGCGAATTCTGCGGAGACAGATTCCTTTCGTCTTCTAGAAGATTAGACCACGTGAAGAGACGTCACCGAGGCGCGAAAGAGATGCCACACGCTTGTGAACAGTGTTCAGCCCGATTCATGAAAGAGGAATCCTTGATTCCGGTCGGCGCATGTGTGGCATGTGCCAGCACAGCGCTAGCTGCTCAAGAGTTTCGCCTGTTCGTTAGAAATTCACAAAAAACTTGGTGGAAAGCAATACACAATGTTGGAACTATACCCTATTCAGCTACACCACCTGTCAAATCTGTCTGCACGTTTATAAATCCTACTGATCTTACAGTACAGAACTTCAAAGATTACACAAATTGCGATGCCAAATCTATTCTAAATAAGTTAAAAAACAGAGTCTCCAAAAAAACAATAGAGAGGAAACCTAGAGGCGCCCGTTCTGGTCCGTCATGCAATTGTCCGGATTGCGGAAAGTCGTTTTTAAGTCCCTACTATTTAAATTCACACTTAAAAAACAGTGGCCATAAAGAAGCTTGTCAAATATGTGGCTCTGTCGTCGTCAGAGGAAAAGAAATGAAAGACCACTTATCATCTGTTCACAATGAGAACGCATTCTTATGTAAACAGTGCCCCATTTTATTCACAAACGAAATTCAACTGAAAAATCACGTCAAAAAAGCCCATAAAGCCGGAGCACTAACTTGCTCACATTGCGGGAGAACTTTTCCAAGACAAGCCTCTTTTGACACTCACTCGCAGATGCACGCAGTAAGGACGTGTCGAGCTTGTGGCGTACAGTTTACCAACAGAGGGTGTTACAGGGAACATAGGTCTCAATGCGAACCGGACGCGAAACCTAATATAGAAAACTGGGACAGGAGCCGCCGTTCAAACGTACGAGACCCAGCTCAATTTACATGCGACCACTGTGGCAAAACTTATAATTCTAGACCACAGCTCAAAAATCATATAATATGGATTCATATGAATATACGACCTCATCAGTGCCAATGGTGTGGAAAAAGGTTTTATACTCCTGCACGGTTGGCTGAACACACTGTTGTTCATACTCGCGTTCGAAACTTCGAATGTGACATTTGTGGCGCGAAACTCGTTTCAAAGATGGCGGCCGTGTATCATAGACGAAGGCATACAGGAGAGCGACCCTATGAATGTGAAGATTGCGGAGAAAAATTCATTTCTGCTTCGCGAAGATCAGAACACGCTAAACGTAGACATAATAAGGGTTATAGGTTACCGTGTCTAAAATGTGCCGCTAGTTTTGTTAGAAAACATGAATTGAAAAAGCATATGGAAAAAGCGCATACGGAACCAGAAACCATTTTGCCGTGGTGA
- Protein Sequence
- MDGALPRGICRPCYEDTVAAITFRNLCTQSTQQWVEVTAYFSQIHPPSEDDKAYFVFCSNEKTVIKDQIGRVPTTAAALERLNMRYQAKPQKTRRQKRTHHPTAACKCPDCGKMFSIPDYLNYHLRNTLKRACTRCGVVMSKKKMARHMSTDHNIMMYSCTICCKLFDKPIDMENHLKETHNENTYCCSVCGNGYYNERALRAHIYAHSLFHCKSCSLSFENIKCYKYHQKQCKIVEQPAFKNFTCDLCGVTYNRKPSLRIHIVQKHLNVLPYVCLTCGKRTSTIAHLRSHEKTHTTQRKIFQCYCGAQLRTELGYQLHQRIHTGERPYECEFCGDRFLSSSRRLDHVKRRHRGAKEMPHACEQCSARFMKEESLIPVGACVACASTALAAQEFRLFVRNSQKTWWKAIHNVGTIPYSATPPVKSVCTFINPTDLTVQNFKDYTNCDAKSILNKLKNRVSKKTIERKPRGARSGPSCNCPDCGKSFLSPYYLNSHLKNSGHKEACQICGSVVVRGKEMKDHLSSVHNENAFLCKQCPILFTNEIQLKNHVKKAHKAGALTCSHCGRTFPRQASFDTHSQMHAVRTCRACGVQFTNRGCYREHRSQCEPDAKPNIENWDRSRRSNVRDPAQFTCDHCGKTYNSRPQLKNHIIWIHMNIRPHQCQWCGKRFYTPARLAEHTVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGERPYECEDCGEKFISASRRSEHAKRRHNKGYRLPCLKCAASFVRKHELKKHMEKAHTEPETILPW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01492234;
- 90% Identity
- -
- 80% Identity
- -