Htar035081.1
Basic Information
- Insect
- Herminia tarsipennalis
- Gene Symbol
- -
- Assembly
- GCA_945859575.2
- Location
- OX243858.1:4299210-4301549[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 4.3e-06 0.00045 21.5 4.2 1 23 8 31 8 31 0.95 2 20 0.00087 0.091 14.3 0.3 3 23 38 59 36 59 0.95 3 20 6.4e-06 0.00067 21.0 0.3 2 23 68 90 68 90 0.97 4 20 1.9e-06 0.0002 22.6 2.3 2 23 99 121 98 121 0.95 5 20 6.7e-05 0.007 17.8 1.8 2 23 129 151 129 151 0.97 6 20 2.7e-05 0.0029 19.0 2.3 2 23 160 182 159 182 0.96 7 20 1.4e-07 1.5e-05 26.2 1.2 1 23 188 211 188 211 0.98 8 20 0.1 10 7.8 0.6 1 23 219 242 219 242 0.94 9 20 0.0018 0.19 13.3 0.8 2 23 255 277 254 277 0.96 10 20 0.00019 0.02 16.4 1.5 1 23 303 326 303 326 0.97 11 20 0.018 1.9 10.1 2.2 2 23 363 385 363 385 0.95 12 20 0.0024 0.25 12.9 5.1 1 23 407 430 407 430 0.97 13 20 4.4e-05 0.0046 18.3 0.5 2 23 437 459 436 459 0.96 14 20 3.8e-05 0.004 18.6 2.1 2 23 466 488 465 488 0.94 15 20 0.0076 0.8 11.3 2.2 1 23 494 517 494 517 0.97 16 20 0.24 25 6.6 4.8 2 23 525 547 525 547 0.95 17 20 0.00021 0.022 16.2 0.5 1 23 554 577 554 577 0.97 18 20 0.025 2.7 9.7 1.6 1 23 584 607 584 607 0.93 19 20 0.039 4.1 9.1 2.8 5 23 624 643 621 643 0.90 20 20 1.1 1.1e+02 4.5 2.7 3 23 665 686 664 686 0.95
Sequence Information
- Coding Sequence
- ATGTATCAAAATCAGCTTGATTTTGTCTGCGATTACTGCTCAAGAACATTTACAAGGAAATATAATCTGCAGACACATATAGAAAATTGCCATATCAATTCATCGTCACATTGTGATATTTGTAACCAGAGTTTTGGCAGTCCAGCTGGACTACAACTCCATCTGTCCAGAGGCCATAATAATTATGCCCAACCGTTTCCAGAATGTGACATTTGTGGCAGAATATTCACAAGAAAACAAAACATAACGTCTCACATGATTACCGTACATTTACACGGATTAGGAGACCATATTCGTTGCAGATTATGTGATAAAACATTCACAACAGAACGAAATCTGAAAAGGCATATGAATCAGCAGCATAATCCTAATGTTGAATATCCTACATGTTATTATTGCAGCAAGGTTTTTAAAGGAAAACATTCATTAATATCTCATATACAGACCGTTCATAACATTAACGAGAAAGATGCTATAAGATGTCATCTATGTGAGAAAGTGTATACAAATACAAGGAATTTGAAAAGGCATATTGAGATGTTTCATGGTGAGAAAGGAGAGTATAGATGTGATATCTGTCCGAAAGTATATACTTCTAATCAGAGTTTGCGAAGGCATTTACGTACAACTCATTCTACAGACAGCCAAGAACAATTCGCTTGCCATTCCTGTGATAAAATCATAATCGGCAGAGAAAATTATGAAAGTCATATTCAGTTCAATCATACGGATTCAGATATTAAAATCATTGATTCAGAAATTACATGTGAAACATGTAATCATGCTTTTGAAGAGGAAAATCAGTTACGTCAGCATATTAAATCTGAACACTCATTTAAATTATTTTATAAATATTGTAAGAAGGTTTTAATGAGGCAATATGGAACTGAATTTGTTAGTAATGTGTATAATTGTGAGTATTGTGAACATGTTTTTCAGACTGTGTATGAGTTAAAAGACCATATGAAAGTGAATCATGATGCTGAATATTCGCTTTCGACTTGCAATGTTTGTTTTAACAAATTTTATTGTAAGGAGACAATGTATGCTCATAAGAGACATTGTCTTCCTCCACCGAATGTTAATTCTTGTAGTCATTGTGACAAATTATTTACAGACATATCAAGCTTAGAATTTCATACTAGAATTTTTCATCCACAAGCTCAGATAGCCGATTCTAATATAACTTCAACGAATTTAGAAGATGAAGTGACCTCTTTTAAATGTGCACATTGCGATAGAGTGTATTACAGTGATCGGTCTCTAAAACATCATATTAAATTAAAACACACATCGGATGAGCAAGTCGAATGCGAATTTTGCGGTAAAATATGCAGTAATAAGTACTATTTAGCGTCTCATATAAAAATTGTACACAATAATGATTCTTGGTCACGTTGTGAATACTGTGATAAACAGTTTAAATCTAAAAGAAACATAAGGAGGCATATTGAGTACACACATCTAGGCATGCAACGTTACAAATGCATTGAATGTGAAACTCTGTTTAAAGAAAAGCGAAGTCTTAGAAAACATGTCAGAACTAAACACCCAAATTCTGCTGTGTTTCCTCAATGCCATATATGTTATAAACGCTTTGAATCAGCAAAATCTTGTAAAATTCATTTAAAATTATTACATTCATTTAACATGAATACGTTTCCATGTCATCTGTGCTCGGTATCATTCGGGTCAAATGAAGCGTTGACTATACATTTAAACACAAAACATTTAGCAGAAGATCAAATTTATAAATGTGAGGAATGTAATTTAGTGTTTAAGGGTCAAGAGCGATTTGACCATCACAATGCAACTTCACATGTAAATTTATTACCTAATATAAAACAAAAAGTGTTGCCTCGTTGCATTTTATGTATGAAAGACTTCAGTACAAGAAAAACTCTTAAAAGACATATTAAAAAGTTTCATAGCGAATTTAACGTTGACGATTTAGCTACATTCGGTTCTAGAAAACGAACATTTACAGTTGACTGTAAAAGCTGTATCAAGAATTTCAGTGATGATTTTCATTATAATATTCATCAAAAGATAAAGCATTTGAAAGAATCTGTTATATTCAAATGTGAAGTATGCCGATCATCTTATAGTGCTCTTGAATACGCAATCCAGAGGTATAAGATTACTCATGGTGATGTCTGTAAGACCAAAGCTATTCTCAGTGAACTATGTACTACAGAAATGAGTGAGGAAGAAAATGAATTTTCTGGATTCGGTTCGTTGCATCAACTCCCCGAAAGCACTACTAGCGATATAAAATTAGAAGTTCCTGATGAAATTGTATGCGAAGATAATATTAAAATGGAACCTATGTCGCCTTGA
- Protein Sequence
- MYQNQLDFVCDYCSRTFTRKYNLQTHIENCHINSSSHCDICNQSFGSPAGLQLHLSRGHNNYAQPFPECDICGRIFTRKQNITSHMITVHLHGLGDHIRCRLCDKTFTTERNLKRHMNQQHNPNVEYPTCYYCSKVFKGKHSLISHIQTVHNINEKDAIRCHLCEKVYTNTRNLKRHIEMFHGEKGEYRCDICPKVYTSNQSLRRHLRTTHSTDSQEQFACHSCDKIIIGRENYESHIQFNHTDSDIKIIDSEITCETCNHAFEEENQLRQHIKSEHSFKLFYKYCKKVLMRQYGTEFVSNVYNCEYCEHVFQTVYELKDHMKVNHDAEYSLSTCNVCFNKFYCKETMYAHKRHCLPPPNVNSCSHCDKLFTDISSLEFHTRIFHPQAQIADSNITSTNLEDEVTSFKCAHCDRVYYSDRSLKHHIKLKHTSDEQVECEFCGKICSNKYYLASHIKIVHNNDSWSRCEYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSAVFPQCHICYKRFESAKSCKIHLKLLHSFNMNTFPCHLCSVSFGSNEALTIHLNTKHLAEDQIYKCEECNLVFKGQERFDHHNATSHVNLLPNIKQKVLPRCILCMKDFSTRKTLKRHIKKFHSEFNVDDLATFGSRKRTFTVDCKSCIKNFSDDFHYNIHQKIKHLKESVIFKCEVCRSSYSALEYAIQRYKITHGDVCKTKAILSELCTTEMSEEENEFSGFGSLHQLPESTTSDIKLEVPDEIVCEDNIKMEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00677880;
- 90% Identity
- -
- 80% Identity
- -