Htar021382.1
Basic Information
- Insect
- Herminia tarsipennalis
- Gene Symbol
- gpkow_1
- Assembly
- GCA_945859575.2
- Location
- OX243845.1:15359930-15392850[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.068 8.4 7.2 0.0 16 38 578 600 572 604 0.89 2 3 0.53 66 4.4 0.0 16 38 713 735 707 739 0.87 3 3 0.19 24 5.8 0.0 15 37 989 1011 985 1015 0.91
Sequence Information
- Coding Sequence
- ATGGAAGGCAATAAGATCTCGTTTGGTTTTAAGAAAACTAAGAAAGCCGATAAACCTGTAGCTGTAAACAATGATGAAAGAAAAGAATACATAGAATGTGTAGAAGAACAATCTATCAAAGTTGTCGGTGGAGAAACAGAAGAAACTAATGAACCACTGGTCATACCTATGAAACCTAATTCACTTATAACTTCTGAAAGATTGATGGAAATTGCGCTGAAGGTTGAAAGTGCACTAGAAGAGCCAGAAATTAAAACTGAATCAGTAACTATTAAAATGGAAGACCCGTTAGGAGAAGAGAATGAAACATTGGATCAAATGGCAGAACGTGAACTGATGCAGGAGGCTCAAAAAGAAATTGTAACAGTCACACCTACAACAGAGATACCAACATCTACTAAGGGTGTTGCCGGAGGAGAAAAAGAGAAAGCAAAAGCCCTCATGAAGGACACCGTTGTCCTTCTATTAGATTTAATAAGTCAACAAAGAGTCATCACTACAAAAGGAACTGACGCTACAACTAACAGACTGAAGGAAGATGCTTGGAAAACGGTAGCCGAGGAATTCTGCACATTAACCGGTGAAATCCGGCGCCCTGATCAATTGCGCCTCAAATGGGAGAACTTAAAAAAGGCTGCCAGAAAGCGTTGTGCTTTAATTAAACAAAATAATGTTAAGGCAAAAGGACGAAAGTCATTTATTCCACCAAACGAGGTACTTGACAAAGTAGCAGCATTGCTAGGTGCTACTAGTGACTATGCAGCGGAGTTTAGTGAAGAAAGTAGAAATGAGGTTGATCTAGACCAAACAAGCTCTGAAGCTATGGTTGATGCCATAGAGCACCAGCCAATGCCAGGAAATCCTCCAATATCTCAATACCTTGGTGTGGAGTTGGATGTATCTAGTGATGTGGCAACTTTTACATCATCACCACCCAAATTTGTATTCAATGCGCCAAGAAATTCATATAATAAACGAAGGAAACTGTCGGAAGACCTCCTAAAGGCTAAAACAGATAAGGAGCTTGCCATAGCTGCTTACTTCCTAGCCCGAACAGAAAAAACTAAACTAGAAAATAAAAAATTGGAATTAGAAATAAAATCCACCTTAGATGATTATGAAGCTATTCCGGTGAAAGATTTTGGTGTTGCAATGTTACGAGGCATGGGATGGAAGCCGGGCCAAGAAGGATCTAAATACAAGCAACCAGAACTTCGTCCTAAAGGTCTTGGATTGGGGGCAGATAAAGTAGTGAAAGCGAAACAACAAGCATCGAAAGACTCCAAACCTGAAGAATTGGTCATTTTGAAGAACTCCTACGTGAAAATTGTTAGTGGGAAATATAGCGACTACTATGGCAAGGTAGTCAGCTTAGATGAAGATAATGGGCGAGTGGTCGTGGACATCCCCGTGAAGAAAGAAATGGTCAGTCTCAGCGAATTCATGATGAATGCTGTAACCAAGTCTGAATACGACAGAGAATCTAAAGTTATAAGGCCTCCTAAAGTGCGCGTGAGTGTTGATAAAAAACAAGAAATAATTAAAATGCACAAGAAAAAAATCCCCATAAGTGATATTGCAAGAGAACTGAAAATAGCGCGAAATACTGTGTACTTATGGATAAAACGTTGGGAAAAGGAAGGTGTTGTTAACGCCCATGGATCAACGGGTCGTCCATGCAAACTATCCGCTAATAAAAAAGCTCTTTTAATGAATGAAGTTAAAGAAACGGAGCTTAGTGTCTCAGACTTAGCGAGTAACCATGGTGTATCTACTGCAACCATTCGTCGATGTTTAAAAGACACTGGAGTCCGATGCAAAAGAAAAAAAAGGCCAATAACTGAACCTATAATTGAAATAGAAGTGCCAATAAAACAGGAATCAGATGGTATAAATATAGATTCTAAGAAGTTACGCTTAACTGAACATAAGAAGGAAAGAATTATTGCTTTGTATAAGCAAAAACATTCTACATCAGCTATTGCGAGGCACTTGAATGTCACGCGACAAACTGTGAACCTATGGATAAAACGTTGGAAAAAGGAAGGTGTTGTTAACGCTCATGTATCATCCGGCCGTCCATGCAAACTATCCGCTAATAAAAAAGCTCTTTTAATGAATGAAGTTAAAGAAACAGAGCTTAGTGTCTCAGACATAGCGAGTAACCATGGTGTATCTACTGCAACCATTCGTCGATGTTTAAAAGACACTGGTGTCCGATGCAAAAGAAAAAAAAGGCCAATAACTGAACCTATAATTGAAATGGAAGTGCCAATAAAACAGGAATCAGATGGTATAAATATAGATTCTAAGAAGTTACGCTTAACTGAACGTAAGAAGGAAAGAATTATTGCTTTGTATAAGCAAAAACATTCTATAACGGCTATTGCGAGGCACTTGAATGTGACGCGAAACACAGTCATGCTATGGGTGAAGCGTTGGAAAAATGAAGGCGTTATTAATCAACATTCGTCAGGTGGTCGTCCATCAAAACTATCTTCAAATGCTGGAGCTCTTTTAATAAAACAAGCCACCCAAGCAGACGATGTTAATTTATCAGAACTTGCAGCCACCCATGGTGTCTCAGTAAGCACAGTTCGAAGGCACTTAATACAAAACGGAATACCATACAAAAAAAAGGAAAGAAAAATCGGTGTTAGAACGAGAAAGGAAGTTCCTAAGTCAGCTGTTGATGATGATATAGGATATGAGGGCATTCATGAACCAAAAAAGGCTGCATACCATATTAATGTTGATAAGAGGCAACAGATTATACTTTTACATGAACAAAAGCATTCTGTGAGTGCTATTGCAAGATATTTAAATATATCGAGAAACACCGTCAATTTATGGATAAGACGATGGAAAGGCGAAGGCTCTATCAACCCACATTTACCAAGCGGTCGTCCACGCAAACTATCTTTAAATCAAGAAGAAATTTTGATAGAACACGCGAAGGAAGCTGAAAAACTTGGCACGTCAAATCTTGCGTCTTGTTTTGGCGTCTCAACAGCTACCATTCGACGACGTTTATGTGCTAATGGACTCAAGTCAAAGTCTAATAAAGAAGAAGAACAAATATAG
- Protein Sequence
- MEGNKISFGFKKTKKADKPVAVNNDERKEYIECVEEQSIKVVGGETEETNEPLVIPMKPNSLITSERLMEIALKVESALEEPEIKTESVTIKMEDPLGEENETLDQMAERELMQEAQKEIVTVTPTTEIPTSTKGVAGGEKEKAKALMKDTVVLLLDLISQQRVITTKGTDATTNRLKEDAWKTVAEEFCTLTGEIRRPDQLRLKWENLKKAARKRCALIKQNNVKAKGRKSFIPPNEVLDKVAALLGATSDYAAEFSEESRNEVDLDQTSSEAMVDAIEHQPMPGNPPISQYLGVELDVSSDVATFTSSPPKFVFNAPRNSYNKRRKLSEDLLKAKTDKELAIAAYFLARTEKTKLENKKLELEIKSTLDDYEAIPVKDFGVAMLRGMGWKPGQEGSKYKQPELRPKGLGLGADKVVKAKQQASKDSKPEELVILKNSYVKIVSGKYSDYYGKVVSLDEDNGRVVVDIPVKKEMVSLSEFMMNAVTKSEYDRESKVIRPPKVRVSVDKKQEIIKMHKKKIPISDIARELKIARNTVYLWIKRWEKEGVVNAHGSTGRPCKLSANKKALLMNEVKETELSVSDLASNHGVSTATIRRCLKDTGVRCKRKKRPITEPIIEIEVPIKQESDGINIDSKKLRLTEHKKERIIALYKQKHSTSAIARHLNVTRQTVNLWIKRWKKEGVVNAHVSSGRPCKLSANKKALLMNEVKETELSVSDIASNHGVSTATIRRCLKDTGVRCKRKKRPITEPIIEMEVPIKQESDGINIDSKKLRLTERKKERIIALYKQKHSITAIARHLNVTRNTVMLWVKRWKNEGVINQHSSGGRPSKLSSNAGALLIKQATQADDVNLSELAATHGVSVSTVRRHLIQNGIPYKKKERKIGVRTRKEVPKSAVDDDIGYEGIHEPKKAAYHINVDKRQQIILLHEQKHSVSAIARYLNISRNTVNLWIRRWKGEGSINPHLPSGRPRKLSLNQEEILIEHAKEAEKLGTSNLASCFGVSTATIRRRLCANGLKSKSNKEEEQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00794576;
- 90% Identity
- iTF_00794576;
- 80% Identity
- iTF_00794576;