Htar031527.1
Basic Information
- Insect
- Herminia tarsipennalis
- Gene Symbol
- -
- Assembly
- GCA_945859575.2
- Location
- OX243854.1:6734164-6734940[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.8e-08 5.9e-06 26.9 0.0 3 36 10 43 8 48 0.93
Sequence Information
- Coding Sequence
- atgaacgcaaaaaagaaatatacggtcgaggatcttgaaagtgcgcttattGCAATTAATAATGGCAGTAGCGTCTATAAGGCTTCCCGAGAATACAACATTCCAGAAACGACATTGAGAGACAAACGTGACCAAAAATATAGTGGCCATATAGCCGGTCGCAAAACGGTACTCTCAAAATCGGAGGAAACAAAAATTGTTGACTGGATCCATTATCTAGGAAAACATGGTTTCCCAGTTTCTAAAGAGCAGTTGAAGCAAGGAGTGGCAAAGCTAGTTGAAAATTTAAACCGTCCAAATACTTTCAAAGATGGTATGCCTGGTAAGCACTGGCTTGCCAATTTTTTGTCAAGACACCCAACTGTAGCAAAGAGAGTAGCACAAACTTTACCAACTCATCGAAACAAAATTAATGAACAAGATGTGCGCAACTGGTTTGATAGAGTCAAAAGTTATTTTGAAACTAATAATTTATTAGGTGTGCTTGAGGATGAATCaagagtgtataactgtgacgaaacggccttttttctctgccccaaagaaaaagatgtcttagtaaaaaagggcagcaagcgtgtgtacaatagagttgctaatgatgagaaagagtgcctaacagttttagtcaatgtgtctgctggaggtaaaatagctccacctatggtattgtatccatacaaacgcctgcctaaaaacttgcctctgacggtgccaccaacgtggggttataggatgtacggaatcagggtggatgaatatggaggctttttatga
- Protein Sequence
- MNAKKKYTVEDLESALIAINNGSSVYKASREYNIPETTLRDKRDQKYSGHIAGRKTVLSKSEETKIVDWIHYLGKHGFPVSKEQLKQGVAKLVENLNRPNTFKDGMPGKHWLANFLSRHPTVAKRVAQTLPTHRNKINEQDVRNWFDRVKSYFETNNLLGVLEDESRVYNCDETAFFLCPKEKDVLVKKGSKRVYNRVANDEKECLTVLVNVSAGGKIAPPMVLYPYKRLPKNLPLTVPPTWGYRMYGIRVDEYGGFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01264474;
- 90% Identity
- iTF_01316276;
- 80% Identity
- iTF_01264474;