Htar026784.1
Basic Information
- Insect
- Herminia tarsipennalis
- Gene Symbol
- Jrkl
- Assembly
- GCA_945859575.2
- Location
- OX243849.1:23645370-23647211[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-11 2.5e-09 37.8 0.1 3 37 17 51 15 55 0.95
Sequence Information
- Coding Sequence
- ATGGTTCGAACATATAAAAAGAAAACTATTCAACACTCTTGGTCTATGGAGGCTATGGAAAAAGCAGTACACTGTGTGGTGTCGGGAGAAATGGGCTACAAAAAAGCTGCACAGTCACACGGTGTACCACAAACTACACTTGAACGGTATGTGGCAAAATATAGGGCTAATCCAGACAACACTGTGTTTGTAAAGAAGTTAGGTCATTACACTACTGTATTTTCTCCTAATCAAGAAAAAGAACTTGTaagttatattaagataatggaagagagattttacggtcttacatcacaggaacttagaaaacttgccttttcattagccgaaaaaaataaaattgaacacaggtttaatacacagaacggtttggcaggaatagactggcttaaaggttttttaaaacgtcatcgagatgttagctacagaaagcctgaacctacctccgcagccagaagtatgggattcaaccgagtagctgttggcaatttttttgatcttctggagaatatttacgacaagtataaattaaatccacagcgtatttataatgtcgatgaaacaggtgtttcaaccgtacctaagagccattctaaaattctagcatcgtgtggcaaacggcaagtaggaactattacttctgcagaacgaggtaaattaatgacgaccattgtttgcttcaatgctgtcggtaattacatgcctcccatgtttattttcccgagaaagcggatgaaaccagaattacttgacggggctccagctggatcttggggagaatgtcatgaatcaggatggatacaaagccatctttttgtactctggctaaagaggtttatagaatggtcacacgctactaaagacgatccaatacttttgctattagatggacatgcgacacatgtgaaatccatagaggtgatagatatggcccgcgaaaatggagtgattttattatgtttcccaccacactgtactcatcgtctgcagccattagacgtagcttttatgaagccacttagcacttactacgggaacgaagtgaaaaaatggttaagaagccacccaggtcgtgtagtgacccaattccagacagcaacattattcggtctagcatttgtagctgcatccacgatgtcaaccgcgataaatgcatttagagcgacaggaatctggcctatggatcgaaatgtttttactgacgcagattttgCACCAGCTGAAACCACAAATAATCCAGAAAATCCAGAGGTAAACCCATGCTTAACAGAGTTAACAGCATCTAATGATTCACAAAATGTCTCTCCGCCTACAGAGTCAACTACAAATCTCACGACCCAAGAACAAAGATCTCCAGAATCTAGACAGGATTGTCCACCGCCAGGATGTTCCTGGATGACTGATCCACCAATAAGTTCTTTTTTAACATCCCCTGAGCAAATTTTGCCTGTGCCGAAGGAAAACCGTACAACACAGAGGGTTGTAAGACGAAGAGGGAAAACAGCAATTCTCACAGAATCGCCTTATAAAAATGAGCTTATTGCACTGAAAGCTACCAAAGAGAGTAAGGAAATGAAAAGGAAAGTCAGCAAAACTATTGATTTAGACCCTAATAAACCAAAGAATAGAAAGAACAAATTAGTAAAAAAACAAAAAAAGGAAAAGGAAACCGTAGGAGATGAAGATGCTGAATGCATTTACTGTGGTTACTTATGGTCTCAGTCAACGGAGGGTTGGATAAGATGCATAAAGTGCAATCGTTGGGCACATTGCTCTTGCGCAGGAGAAGATGATGAGGATGACGAAACCACACATGTATGTGCCCTATGCATTGTTGATTAA
- Protein Sequence
- MVRTYKKKTIQHSWSMEAMEKAVHCVVSGEMGYKKAAQSHGVPQTTLERYVAKYRANPDNTVFVKKLGHYTTVFSPNQEKELVSYIKIMEERFYGLTSQELRKLAFSLAEKNKIEHRFNTQNGLAGIDWLKGFLKRHRDVSYRKPEPTSAARSMGFNRVAVGNFFDLLENIYDKYKLNPQRIYNVDETGVSTVPKSHSKILASCGKRQVGTITSAERGKLMTTIVCFNAVGNYMPPMFIFPRKRMKPELLDGAPAGSWGECHESGWIQSHLFVLWLKRFIEWSHATKDDPILLLLDGHATHVKSIEVIDMARENGVILLCFPPHCTHRLQPLDVAFMKPLSTYYGNEVKKWLRSHPGRVVTQFQTATLFGLAFVAASTMSTAINAFRATGIWPMDRNVFTDADFAPAETTNNPENPEVNPCLTELTASNDSQNVSPPTESTTNLTTQEQRSPESRQDCPPPGCSWMTDPPISSFLTSPEQILPVPKENRTTQRVVRRRGKTAILTESPYKNELIALKATKESKEMKRKVSKTIDLDPNKPKNRKNKLVKKQKKEKETVGDEDAECIYCGYLWSQSTEGWIRCIKCNRWAHCSCAGEDDEDDETTHVCALCIVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01341131;
- 90% Identity
- iTF_00794291;
- 80% Identity
- iTF_00794291;