Basic Information

Transcription Factor Domain

TF Family: RHD
Domain: RHD domain
PFAM: PF00554
TF Group: Beta-Scaffold Factors
Description: Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal DNA-binding domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See PF16179) that functions as a dimerisation domain [1-2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 1.7 4.1e+04 -3.7 0.0 34 47 40 53 31 64 0.72

2 3 1.1e-05 0.27 13.1 0.1 1 29 74 103 74 114 0.87

3 3 1.6e-06 0.04 15.9 0.0 128 168 125 164 111 165 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	1.7	4.1e+04	-3.7	0.0	34	47	40	53	31	64	0.72
2	3	1.1e-05	0.27	13.1	0.1	1	29	74	103	74	114	0.87
3	3	1.6e-06	0.04	15.9	0.0	128	168	125	164	111	165	0.83

Coding Sequence: ATGCGTATGATTGATCAAGCTATTAATGGAGAGGCAAGCCAAGTGAAAGAAGTAACCGACTCAAGTGCAATACATCACCTAAGACCTACTTCGCCGAGCCTTCCAGCCTCTTTAGTAGCGACTGGCCAACACCCTACCATAGACCTTGAGAAACTCCAGCAAGCTATCATGTCAGGCTACAACATACACGCTTCCGAAAAACCCGTTACATTACCTTTTTTGGAGGTCAAAGAACAGCCTTGTGAAAGAGTTCGGTTCAGATATCTAACAGAACTGCAAGGCACTCCTCATGGGCCTTTGGAAGACACCAAAGGATGTCCAGTTGACGGGACCAAACTTTCATCACCACATCCTTTGGAAGAGAAGATGTTGGCTAACAGGATTAGGTCTATTGACAAGAATACAGTGTATCTGTATTTCGAAGCGTATCAGATTCAAAGGAATGGAATGATGAAGCTGTGTGAACCTGTCTTGTCTGGACCAATAAGGAACCTGAGTAAGTCAAATAGATATCAGACGGGGAAAGACTGA
Protein Sequence: MRMIDQAINGEASQVKEVTDSSAIHHLRPTSPSLPASLVATGQHPTIDLEKLQQAIMSGYNIHASEKPVTLPFLEVKEQPCERVRFRYLTELQGTPHGPLEDTKGCPVDGTKLSSPHPLEEKMLANRIRSIDKNTVYLYFEAYQIQRNGMMKLCEPVLSGPIRNLSKSNRYQTGKD

Sequence clustering based on sequence similarity using MMseqs2