Hlin009933.1
Basic Information
- Gene Symbol
- Bgb
- Assembly
- GCA_026182355.1
- Location
- JAPFBL010000086.1:937373-942044[+]
Transcription Factor Domain
- TF Family
- CBF
- Domain
- CBF_beta domain
- PFAM
- PF02312
- TF Group
- Beta-Scaffold Factors
- Description
- Core binding factor (CBF) is a heterodimeric transcription factor essential for genetic regulation of hematopoiesis and osteogenesis. The beta subunit enhances DNA-binding ability of the alpha subunit in vitro, and has been show to have a structure related to the OB fold [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4e-15 8.2e-11 43.8 2.2 1 49 30 80 30 86 0.87 2 2 0.078 1.9e+03 0.3 0.0 18 52 159 193 143 214 0.73
Sequence Information
- Coding Sequence
- ATGCTCTCCACCAACGATCACCACGCGATGCTCCCGTTTGACTCGCTCGGACTTTATGAACAGCCCAAGCCGAGGTTTATCTTCAAGATGCCACGTGTTGTTCCCGATCAGAAGTCCAAGTTTGAGTCAGATGAGCTCTTTAGACGTCTCAGTAGAGAATCCGAGGACTCACTTCGATATTTCGACATCCGTCGTCATCGGGAAGAAGTGCGAAGTACTCGCGTTGAGAAGCAAACTGCTACTGGCCTCCAGAGTAACTCGCCTCCAGAGAGCGCTAAACAATCTTTGATGTCATCTGAAAGTGAGGAAGGTTTTTCAAGAAGGAATTTGCTAATAATTCCCTATAGCCCATGTTTAAAAGACATACCATACTTTTTTAAGAAGTTAGATATCTCAGTTATATTTAGTATTGGTGATAATTTATCAAATAGACTTGTCCATAACTCTAAGAGAAACCGGAAAAACTGTTGTGTATATAGAATTCCTTGCAAGGATTGCGAGTTAGCTTACATTGGACAGACAGGAAAAGGAATTAACACAAGGATTAAGCAACATCAGTATTCTGTTAGAAGACAGGACGATAAAAGTACCTTGTTCCTACACATTAGAGACAAAAATCACTTAATCAACTGGGAAAAAGCAAAGGAGTTGGTATGTCATATGAAAGAAGAAGAAACATTGTTGAAAGCGCCCTCATAA
- Protein Sequence
- MLSTNDHHAMLPFDSLGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEDSLRYFDIRRHREEVRSTRVEKQTATGLQSNSPPESAKQSLMSSESEEGFSRRNLLIIPYSPCLKDIPYFFKKLDISVIFSIGDNLSNRLVHNSKRNRKNCCVYRIPCKDCELAYIGQTGKGINTRIKQHQYSVRRQDDKSTLFLHIRDKNHLINWEKAKELVCHMKEEETLLKAPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -