Hmer011434.1
Basic Information
- Insect
- Hermaeophaga mercurialis
- Gene Symbol
- RNF216
- Assembly
- GCA_951812935.1
- Location
- OX638360.1:42600402-42614790[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.9e-14 6.8e-10 39.9 0.6 1 49 46 93 46 99 0.84 2 4 4 3.4e+04 -8.4 7.6 47 59 426 434 407 441 0.47 3 4 4 3.4e+04 -6.2 5.3 8 12 500 504 495 541 0.58 4 4 4 3.4e+04 -6.6 7.4 31 31 581 581 561 606 0.48
Sequence Information
- Coding Sequence
- ATGGAAAAAAGTGGTAACCCACCACCTTACTCTCCATCATATGGTGTCCCGGAACCAGGATTCCAAGTTCCACCACAGCCCCCACAACAACAAACagttattgtaACGCATACTGTGGCTGCTGCACCTGTGGGTCCTAATCCAACTTCCACGACTTGCCCATCGTGCCATGCTCAAATAGTTACTTCAGTGGAAACAGAAACAACTACTAAGACACATTTATTTGCTCTACTGCTGTGCCTTTTTgggatGGCAGAGGCAGTAAATCCAAACTTTCTTCATCTTTTAAGAGACATTTTTCCTAGAACAGATGAACAAATTATCACTAACATAATTCAGATTGTTGAAGAAAACAATCCAGCTGATTCATTTGatggtaaatttgaaaatatgataaatttattatcaggAGATGGGGCCCAAGGTCCTATACCTGGCTTGATGTTTCCGTGTAATTCTAATGCTGagaatttatatcaaaatttaatatcaattttttcatttgttgaTGAGGACTATATTCATGATTATGTAAATTCTAGACCTCATTATGACATTGAAGATGCTCTTGAAGAATTGAGTGACCGTGATATGCCCAAAAAACAGATAGACCCCATAATCATCAGAGAACAACTATTAGCTGCTCTACCAAATGCTGATCcagattatataaaaaaagaagctGAAAGGTTAGCACTACTCCCTTCTGAAGACTTAGATGCCTTTGTTCAAAATGCAATTGAGAAAAGCGACTATCCTACAATGCAAGATTACATAAAaaacaaaaaacgAAATGATGATTTGGCCTTGTACAAAGAAAGCTTTGACATACAGAAATTTCTAGAAGTTATTCCTAATCCAGAAGAACAATTTATGAATCCAAATAGGAAACTATCTCTAgatgaaaattcagataaaattGATGAACAGTTtgctttgaaatttttatacaatcaGTATAGGTTTATCAGAAGAAAGTATATTGATAtgttatttaaatgggaaaatCGAAACTTGGTAGCTATTTGTAATAGactggaaaaattaaacaaaagctTAAAAAAAGCAAGGCCAGTGGAGGCTGTTTTCTATgaatcacaaaataaaaatttattacaagtgGTAACATATTTGAAATATCGAAAACTGATAAAAAGAGAACTTAAACTCAAAGAGGAAATATATTTACAAGCCATAGCAGAAGCAAGAAAATATAATCTTTTGGAAACATGTCAATGTTGTTTCGATGATGAGTTAATTCCAGAGGAGTGTTATTTTTGTATGAAAGATTGTGTTTTTTGTAAAGACTGTGTAAAAAAAGGTATGGAAGTTGGAATTGGCAGAGGAGAtattaaatttccttgtttgTCAAACTGCAATGCAGAATTCAATTTACACACATTACAGatggtgttaccaaataatatatttcaacgACTCACTCAGCGCATTGCaagtgaagaaataaaaaaagctaaTGTAGAAGGTCTACAAACTTGTCCTTTTTGTGATTTTGCTATGGTTTTACCTAcaaatgagaaaatatttaagtgtATTAATCAGGATTGTCTTATGGAATCATGTATACAGTGTCGACATAAATCCCACATTCCATTAAGATGTAATGAAATAGAATATGATGAGGATGTCCTAAGAAGGACTTACATTGAAAACAAAATGACGGAAGCTTTGGCAAGAACCTGTTACAACTGTAAAAAGTTATTCATCAAATCTACTGGCTGTAACAAGATGACATGCACATGTGGAGCAAAAATGTGTTATCTTTGTGGGCAAGCTATCAATGATTATAACCACTTTGGAAATGGGCGTTGTCAATTATTCAGTAACGACGCGGAAGTTCAGCTTCAAAGAGTACTAAAAGGTGCAGAACAAGCGAAGAATGATTTGGGAAATGTAGAGGTTAAATTTGATCCTACTACAAATATCCAGGAGTTTTTTCGCTAA
- Protein Sequence
- MEKSGNPPPYSPSYGVPEPGFQVPPQPPQQQTVIVTHTVAAAPVGPNPTSTTCPSCHAQIVTSVETETTTKTHLFALLLCLFGMAEAVNPNFLHLLRDIFPRTDEQIITNIIQIVEENNPADSFDGKFENMINLLSGDGAQGPIPGLMFPCNSNAENLYQNLISIFSFVDEDYIHDYVNSRPHYDIEDALEELSDRDMPKKQIDPIIIREQLLAALPNADPDYIKKEAERLALLPSEDLDAFVQNAIEKSDYPTMQDYIKNKKRNDDLALYKESFDIQKFLEVIPNPEEQFMNPNRKLSLDENSDKIDEQFALKFLYNQYRFIRRKYIDMLFKWENRNLVAICNRLEKLNKSLKKARPVEAVFYESQNKNLLQVVTYLKYRKLIKRELKLKEEIYLQAIAEARKYNLLETCQCCFDDELIPEECYFCMKDCVFCKDCVKKGMEVGIGRGDIKFPCLSNCNAEFNLHTLQMVLPNNIFQRLTQRIASEEIKKANVEGLQTCPFCDFAMVLPTNEKIFKCINQDCLMESCIQCRHKSHIPLRCNEIEYDEDVLRRTYIENKMTEALARTCYNCKKLFIKSTGCNKMTCTCGAKMCYLCGQAINDYNHFGNGRCQLFSNDAEVQLQRVLKGAEQAKNDLGNVEVKFDPTTNIQEFFR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -