Hmer012105.1
Basic Information
- Insect
- Hermaeophaga mercurialis
- Gene Symbol
- pita
- Assembly
- GCA_951812935.1
- Location
- OX638361.1:709643-711608[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.0061 30 5.7 0.0 21 52 177 208 173 209 0.83 2 7 0.13 6.2e+02 1.5 0.0 21 44 205 228 203 232 0.90 3 7 0.004 19 6.3 0.1 21 44 233 256 230 261 0.90 4 7 0.0028 14 6.8 0.2 21 48 261 288 257 294 0.86 5 7 0.0071 35 5.5 0.1 21 44 289 312 285 320 0.89 6 7 0.034 1.7e+02 3.4 0.1 22 43 318 339 313 343 0.87 7 7 0.0017 8.3 7.5 1.9 15 45 338 369 332 374 0.77
Sequence Information
- Coding Sequence
- AtggaagatatttttttagattttaaaaaaatatgcagggTTTGTTTAAATGAAGGTTCAATGATGTCTCTTTTTAGAGTAAAtatatcaagaaaattaatgtcTTGTGCATCCATACAGGTTTGGCAAAATGATGGTTTACCTGCACAGATTTGCAATAAATGTGTAGCCAAGTTACATATATCATTTCAATTCAAACAATTATGTGAAAAATCAGATACAAGACTTCGgcagtatttaaataaaactgcaAAAAAGCCTACCACTAATTTACCCCAATATGAAGAAACAGTAACTGAAGATAGTGAATACATTGAATGTAAACCTTTAATAGCAAATCTTCGATCAGAAAATAATTGTATACCCCTCACTCAAATTGATCAATCTATTGATATACATGATACAGAAATAACTCCTGTGCAAatagaTACTCACACTCAAATCTTATTTGAGGATCAAACACAACCTATTTTGAATGGCATAATTATTAAAAGGGAAGATgacattgataaaaatatagaaaataaatcagACATAACAAAACAATGTCCAACATGTAATAAGATCTGTGGAGATGGCACTAAACTTAGAAAACACATGAAAATTCACGTTTCGGACAAGCCTTATAAGTGCGAAGTATGTAATAAAGGTTTCGCTCATGGTGGAAATTTAAAAGTTCATTTAATGACACACACAGGAGAACGCCCCTTTAAGTGCGCTGTGTGCAATAAAGGCTGTAGGCAAGCTCAGGACTTAGAAACTCACATGAGAACACATACAGGTGAAAAACCACACAAATGTAACATTTGTCCCAAGGCCTTTGCAACTAGTTCAAATCTTATAGCTCATATTAGACTTCACACTGGAGAACGACCATATGTTTGTTGGATTTGTCAGAAATCTTTTACCCAGTCCAATAGATTAACTAATCACATGCTGACGCATACAGGAGAAAAGACACACACATGTGATATTTGCCATAAAGGTTTCAATCGTTCTAGTACGCTGAAAGAGCACCGACGCTCGCATACTGGTGAAAGACCCTATATTTGCCCAGTTTGCAACCAAGCGTTTACTAGAAATTGTCATATGAGAGGTCATTTGAAACGCCACAGTGATACAAATTGCAAATCGGAAAAGGAAGAAGAGAAAGAGAAAGAGAAAGACGTAAATGAAACCTTTAGTTGTAATTTTTGTAGTAGTAGCTTTAACACCACATCAGAATATACCAATCACTTAAAATCCCATACAACTAGTGATGTCAGCTAG
- Protein Sequence
- MEDIFLDFKKICRVCLNEGSMMSLFRVNISRKLMSCASIQVWQNDGLPAQICNKCVAKLHISFQFKQLCEKSDTRLRQYLNKTAKKPTTNLPQYEETVTEDSEYIECKPLIANLRSENNCIPLTQIDQSIDIHDTEITPVQIDTHTQILFEDQTQPILNGIIIKREDDIDKNIENKSDITKQCPTCNKICGDGTKLRKHMKIHVSDKPYKCEVCNKGFAHGGNLKVHLMTHTGERPFKCAVCNKGCRQAQDLETHMRTHTGEKPHKCNICPKAFATSSNLIAHIRLHTGERPYVCWICQKSFTQSNRLTNHMLTHTGEKTHTCDICHKGFNRSSTLKEHRRSHTGERPYICPVCNQAFTRNCHMRGHLKRHSDTNCKSEKEEEKEKEKDVNETFSCNFCSSSFNTTSEYTNHLKSHTTSDVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00792422;
- 90% Identity
- iTF_00792422;
- 80% Identity
- iTF_00792422;