Hmer006991.1
Basic Information
- Insect
- Hermaeophaga mercurialis
- Gene Symbol
- -
- Assembly
- GCA_951812935.1
- Location
- OX638359.1:33529454-33531104[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 5.9e-05 0.29 12.2 0.1 21 48 169 196 160 202 0.85 2 6 0.99 4.8e+03 -1.3 0.0 21 30 226 235 205 257 0.66 3 6 0.049 2.4e+02 2.8 0.1 21 45 331 355 327 361 0.89 4 6 0.038 1.8e+02 3.2 0.1 26 47 364 385 357 390 0.84 5 6 0.0024 12 7.1 0.1 21 46 387 412 383 414 0.90 6 6 0.00046 2.2 9.4 0.1 21 45 415 439 411 443 0.91
Sequence Information
- Coding Sequence
- atGAATGAAGACATTTCCGTAGGGAAAATTTCTATGGAAGATTTTTCACATATTTGTCGTATTTGTTTACACACAAGAGATATAATTCCAATAGAAGAAAACATTCTTCACCTTTTCACAATAATTCCCAATTTTCAGgttGTATTGGATGATGAATTACCACATCAAATATGTGAAAAATGTATAACTAAACTTAAAGATATATCCACTTTTTTTAGTTCTgtagaagaaaattatttacatcttaaaaagattattaatgaaacaaaatacaaaacaaatacaCAATCTGATAATGACCAAATAAATGATGGAAATTGTAACTTCAATGATAACTCTGATAATGATAGTCCTAGTGGAGAAACtgatagtaagtttgaaacacCTATAAACCTTTCAAAAAATGAATGTGTTTCAAAAAGACCTCCCCTTATAAAATGCAATGAATGTGATAAATCTTTCTCTAAAGAAAGCAAGTTAAAGATACACTTGAGGTCGCACACTAAAGAGGCCCCTCATGAATGTAAAATATGTCTTAAAAAGTTTAGGTATGCTCCTAATCTAAAGAGACATGAGAATATAACTCACAAGGGCATAAAACCATTTGGATGTGATACTTGTGAAAAAAAATTTGCAACTCTTATACGGAAAACTGAACATATGCGTATTCATACAGGAGAGCGCCCTTATGTCTGTAATATGTGTGGTttaagtttcaaaaaatattctacttatTATTCCCATGAGCGtcgacataaaattaaaaatgggcTCATTCCAAAGAgtgaaataatttctaaaaagtattttagaaaACCTCCCCCCCCTTCTGGATTAGAATGTaaaatttgccaaaaaataTTGTCTTGTAAACAATCACTAtttgttcacaaaaaaatacattcagGAGAAAAACCCTTTCTATGTACAGAATGTGGCAAGAGTTTCATAAGAAAAATCCATTTGGAAGTACATTTTCGAATACATACAGGAGAAAAGCCTTACAAATGTGCCGATTGCAGTAAAGAATTTAGACAACATGCCTCGTACCGAAATCATCTTTTTATCCACAAAAACAAACGGTCTTTTAATTGTCAAATATGCCAGAAATCTTTCATCCAATCAGGTCATCTTCAAAACCACTTAAAAACACACACTGGGGAAAAACCATATAAATGTACCTTTTGTAGTAGAGCATTTTCACAAAATGGAAATTTAAGAGCGCACATGAGGATTCATACTAATGAGAGACCCTATCAGTGTACAATTTGCTATTCGGAATATTTAGATTCCAGTAGCTTAAAAAAGCATATGAAAACTCACAGTGTAGGTGGAGATAAGACTGAGTAA
- Protein Sequence
- MNEDISVGKISMEDFSHICRICLHTRDIIPIEENILHLFTIIPNFQVVLDDELPHQICEKCITKLKDISTFFSSVEENYLHLKKIINETKYKTNTQSDNDQINDGNCNFNDNSDNDSPSGETDSKFETPINLSKNECVSKRPPLIKCNECDKSFSKESKLKIHLRSHTKEAPHECKICLKKFRYAPNLKRHENITHKGIKPFGCDTCEKKFATLIRKTEHMRIHTGERPYVCNMCGLSFKKYSTYYSHERRHKIKNGLIPKSEIISKKYFRKPPPPSGLECKICQKILSCKQSLFVHKKIHSGEKPFLCTECGKSFIRKIHLEVHFRIHTGEKPYKCADCSKEFRQHASYRNHLFIHKNKRSFNCQICQKSFIQSGHLQNHLKTHTGEKPYKCTFCSRAFSQNGNLRAHMRIHTNERPYQCTICYSEYLDSSSLKKHMKTHSVGGDKTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00792423;
- 90% Identity
- iTF_00792423;
- 80% Identity
- iTF_00792423;