Haes025010.1
Basic Information
- Insect
- Hemithea aestivaria
- Gene Symbol
- -
- Assembly
- GCA_947507615.1
- Location
- OX382349.1:10528820-10540632[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0059 0.46 11.7 0.3 3 23 256 277 255 277 0.93 2 19 1.1 87 4.5 0.5 2 23 281 302 280 302 0.94 3 19 6.8 5.3e+02 2.0 0.6 1 23 307 330 307 330 0.90 4 19 0.02 1.5 10.0 0.8 2 23 387 408 386 409 0.95 5 19 0.0049 0.38 11.9 1.5 1 23 415 438 415 438 0.95 6 19 0.063 4.9 8.4 0.4 2 19 443 460 442 462 0.94 7 19 3.8 2.9e+02 2.8 10.7 1 23 471 494 471 494 0.96 8 19 0.014 1.1 10.5 2.3 1 23 498 521 498 521 0.95 9 19 0.15 12 7.2 4.4 2 23 533 554 533 554 0.97 10 19 0.059 4.6 8.5 0.7 1 23 561 584 561 584 0.95 11 19 0.024 1.9 9.7 1.7 2 23 590 610 589 610 0.94 12 19 0.0015 0.11 13.6 3.1 2 23 617 640 616 640 0.91 13 19 0.021 1.7 9.9 0.4 2 23 644 666 644 666 0.97 14 19 0.00096 0.075 14.1 0.3 1 21 672 692 672 693 0.96 15 19 0.063 4.9 8.4 0.1 1 23 711 734 711 734 0.97 16 19 0.019 1.5 10.0 0.3 1 21 740 760 740 761 0.94 17 19 0.41 32 5.9 2.5 2 23 767 788 767 788 0.97 18 19 0.0011 0.083 14.0 0.6 1 23 794 817 794 817 0.96 19 19 0.017 1.4 10.2 1.9 2 23 823 845 822 845 0.89
Sequence Information
- Coding Sequence
- ATGCCGCCGCAGCCCTACTTAACCATAGAAGCCCAACTTGAAGAAATATCTCATTCGGAAAGAATATGGAAAGGATTGGACTTATTACCAGAAGAGAACCCTCGTTCAGAAGGTAACTCAAGGCCAGTCCTGCATCACGTGGGCTTCCTCAAACAGAAGCTTGTGTCAATCCTGTACTGCGAGCAGTTCTGTGCTCTCTGCTGCGACTCGGACAAGCCTCTCAAGCTACTCCGGGAACAAATACTCATCATCACTGACAACTGGACGCAGACTACTACACTCAAACAACTCTACCAATATGTTTTACATCAGAAGGCAGAGCCAGCAAGTGATTACATATGTACAGATTGTTCAGAACAATTGAAACAATCGTACATTTTCATAAAATACTCCAAACTAACGACAAAGCTCTTAGAGTCGTACATCAATGACTTGAAGTTAATGTCCGACGAGAACGAGCATAATATGGTTGCTAATTACATTGAAAAAGATAACTTTAGGTTTAACGTCATGTTACTGAAAGGGCAACAAGTGCAGAAATATTTACCTAATGAGAAAAAACAGAAGAATGAAAATATAGAAATTACAAAGAACAATTTTAACGTAACACAGACAACTTTTATGAGTCAAAAAGATACTGCAATTCCGGAAACTGCCAACACAATAGAAGCCGAACTGAGTACATTAGAAACTCTTGAAGAAACATTTGAACCAGAACCTATTGTAACCACAAAACGAAGAATAAGACTTGAACCGAAAATATTATGTGAAATATGCTCAAAAGCATTAAATACTCAGAGCGAATTGTCACAACATTACACTCTGACTCACTTTAAAGTCCGCTGTCAGATCTGTACAAAATTAACTGACGAGACAGATTTCCAACAACATTTATCAACGGAACATAAAAACAAAGTTTACTTCTGTGAATTATGTGTACGGCCATTTTATTGTTGGACAAGTGTGATCATACACAATAGAATTGTGCACGAAAATTATGATTCCGCTATATGTGTGCTTTGCGCGAGTAAATATGGCGACGATCACGAACATCCGGAACTCAATTGCCCAGAGTGTGGCAATATGTCGTCATGTATTCATAAAAAATACTTGTATTCATTCATGGACCACAAACTCAATAACAGAAATGCAAAAGTAAAGTGTCCGGATTGCGACTACGTCACCAGATGGAAGGCCAATTTTCTGACGCACGCTAACAAACACCACTTGAAACACTATCCTTATATTTGCTCGCAATGTGGTAAGCAGTTTTTCGACAAAGATTCAATGGATGAGCACAATAAGAAGTATCACTCTAGTGTGTTGTATTGTTCATATTGCGATTGTGTGTGCTCGAGTGAAGGCGCGCTGGCGGCGCACGAGGCAGACTGTAGCGCAACAACACGAGCGCACTGCTGCCAATACTGCGCGGCTTCCTTCCACACATTCAAACTGCTGCAGAAACACCACAACACGCGCCACAAGGAGACCTTCCCCTGCAACTTCTGCAACAAAGTGTTACGAACAGAACAGTATAGAAGACATCACATAAACAGTGCCCACAGTCTTGTGCAAAAGCCAGTGAGTAATAAAGCCACATGTAAAATGTGCCACGATTTATTCGATCTGAGGAGTGAACTGACACATCACATGAAGATACATCAAGGTCCCGATGCCAAATACAATTGCAAGCCGTGTGACACTGAGTTCGAAAGTTTGGAGACACTCCAATCGCACAACAAGAGCCAGCATGAAGACGCTACCTGTGTTTGTAACATTTGCGGTAAAAAAATTAGCAAGACGTGGTTGAAACAACATTTACAAGACCACAAATACGATGCTAAATTGAGTTGTGAAGATTGCGGGAGGTCCTTTACTAATATCAAGCGGTATCAGCGTCACAGTAGGACATGTGACCACGCATCTCGCAAGTGCAAGTTGTGTCCCCACGTCGCATCCAAACCTGCGTATTTAGAAGCTCATGTGAATAAATTCCATCTCAATATTAGACCGTATGTATGCGACACGTGCGGGACAGGATTTCACGGGAAACATTATTTGGTGGCTCATATGAAGATATGTCAGAATAAGGCTGGTGACAATATCAAGCGACTTCCGCGTTACAAAAAGTACAAGTGCACATTATGTCCCTACGCTGGTGTGCTTCGTGAGAATTTAGATACTCACGTGAACAGAGTCCATGCCAAGATTAAACCGTATGCATGTGATAAGTGCGACAGACGGTATCACGGCAAGCCGTATTTGTGGGCTCATAAGAGGATATGTCAGAACAAGCCTCGCTGTGACGTGTGCAACAGAGAAATGTGTTCCATGGACAGTTTGAAGATTCACAAGAACAGTCACGTGGCCGAGAAACAATTCAAGTGCGAGGAGTGCGGCAACATGTTTGTGTCGGCCGAGGCGAGGAGGAGGCACTACAACAACAAACATGCTCCCAAAAACATCCCATGCTCGCACTGTCCCATGAAATTTGCCACCTTGGGAAAACTTCAATGGCATTTTGATAATTGTCATCAAACTGTGATAACCTTGAATGAGATTTAA
- Protein Sequence
- MPPQPYLTIEAQLEEISHSERIWKGLDLLPEENPRSEGNSRPVLHHVGFLKQKLVSILYCEQFCALCCDSDKPLKLLREQILIITDNWTQTTTLKQLYQYVLHQKAEPASDYICTDCSEQLKQSYIFIKYSKLTTKLLESYINDLKLMSDENEHNMVANYIEKDNFRFNVMLLKGQQVQKYLPNEKKQKNENIEITKNNFNVTQTTFMSQKDTAIPETANTIEAELSTLETLEETFEPEPIVTTKRRIRLEPKILCEICSKALNTQSELSQHYTLTHFKVRCQICTKLTDETDFQQHLSTEHKNKVYFCELCVRPFYCWTSVIIHNRIVHENYDSAICVLCASKYGDDHEHPELNCPECGNMSSCIHKKYLYSFMDHKLNNRNAKVKCPDCDYVTRWKANFLTHANKHHLKHYPYICSQCGKQFFDKDSMDEHNKKYHSSVLYCSYCDCVCSSEGALAAHEADCSATTRAHCCQYCAASFHTFKLLQKHHNTRHKETFPCNFCNKVLRTEQYRRHHINSAHSLVQKPVSNKATCKMCHDLFDLRSELTHHMKIHQGPDAKYNCKPCDTEFESLETLQSHNKSQHEDATCVCNICGKKISKTWLKQHLQDHKYDAKLSCEDCGRSFTNIKRYQRHSRTCDHASRKCKLCPHVASKPAYLEAHVNKFHLNIRPYVCDTCGTGFHGKHYLVAHMKICQNKAGDNIKRLPRYKKYKCTLCPYAGVLRENLDTHVNRVHAKIKPYACDKCDRRYHGKPYLWAHKRICQNKPRCDVCNREMCSMDSLKIHKNSHVAEKQFKCEECGNMFVSAEARRRHYNNKHAPKNIPCSHCPMKFATLGKLQWHFDNCHQTVITLNEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00791555;
- 90% Identity
- iTF_00791555;
- 80% Identity
- -