Hchr016236.1
Basic Information
- Insect
- Hemistola chrysoprasaria
- Gene Symbol
- -
- Assembly
- GCA_947063395.1
- Location
- OX346724.1:3651431-3653302[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.3e-10 2.2e-07 31.2 0.0 1 44 18 62 18 63 0.90
Sequence Information
- Coding Sequence
- ATGCCTCGTTCGTACAAAAAAAAGGTTGGTGGGCGTACTTACCAAAATTACACCAAAGAAAAATTACAGGAAGCAATCAAGGACATACTAGAAAATGGAATATCTTTTAGAAGCGCgcaagataaatataatatacatcgcAACACTCTTCATAACAAGATCAAAAAAAAACACTCAGGTGCTAAGACGGGACGTCCCACTATTTTCACCCCCGAAGAAGAAACAGAATTTGTGAAACACATAATTTCTATGTCAAGTTATGGTTTTCCTGTAACCCCTTTTGAATTGAGATGTATTGTACGATCATACCTTAACAGAATCGGCAAAAACGTCCCTTGTTTCAAAGAAAATTTGCCTGGTGTTGACTGGGTTAACAGCTTTATTAAGCGACATAAATCAGTACTGTCGCACCGATTCGCCAAAAACATTAAGAACGCTCGTGCTGCCATAGATGCCATAGACCACTTAGAAAACGAGGTGAAAGACGTGCCTGCTGCAAACATATGGAATTATGATGAAACTAATCTAGTAGATGATCCCGGTTCAAAAAAAGTTATAGTAAGAAGAGGCTGTAAATATCCGGAAGTCATTCGAAACTCGACAAAAGCATGTACGTCTATAATGGTTGCTGGGAATGCTGCAGGTGATATTGCCCCAGTTTATGTTAACTACAAGGCAAAGAAACTTTGGCAAACTTGGATTGAGGGAGGCCCTGAAGGAGCTCGCTACAATAGCAGCAAGTCAGGATGGTTCGACACACAATCTTTCGAAGATTGGTTCATGCATTTAATGCTTCCGATTCTAAAAAAGCAAGAGGGTAAAAAAGTCGTGATCGGAGATAACCTCAGTTCTCATCTAAACATGGAGGTTGTGAAAGCTTGCGAAGATAACAACATCTCTTTCGTGTGTCTTCCACCTAACGCAACACACCTCTTCCAGCCACTTGATGTGGCTTACTTTCGACCAATGAAAGTCAATTGGCGAAAAATTTTATCAGACTGGAAAGCAACACATCATGGTAGCCGATGCCCCACAATACCCAAGGATTGTTTTCCGAGACTCCTGAAGAAGTTGTTTGATGTGTTAGAACCATCAAATAAAGAAAACCTAAAATCTGGGTTTCGTAAATGTGGGATATCACCAATTAACAGGAGTATGGTTCTGGATCGTCTTCCAAAAAATATTCTGGATACCAGTCTTCAAGAAATTGGGAATGTCAGCGAATCGTTTGTAGATTTTCTGATAAGTTCAAGAGAAACTCAAACCGTGGTTAAGCCAAGACAAAAACGCAAAGCTGTTAATGTCGTCCCAGGCAAAGGCGTTACTTGTACGGACTTAGAAGTCGGGGAGCAACCTTCAACATCAAATATAAGTGCTGGTTCTTCAAACGCAAAGAATTTAGGGAGGAAACGTCAAAGAATCCCAGTTGCCAGGAACTCATCATCTTCAGAAAGCGAAGATAACTTTTCTCTCAGAGATAGCAGCTGCAGCCCATATAATGAAATGGATGAAATTGAAGATCTAGAGAATATGCTACCCCATCAGCCTGAATTGAAGACCCTTAGAGAGATGATTTATGAAAATGGAAGCTCGAGTGAAGAAGAGGTAGATACATACAAAGAAGGCGATTATGTTATTGTCAAATACGAAGGGCAATATTTCCCGGGAAAAATTACAGTAAAAGATAATAACACCTTTTTAATCTCCACAATGACCAAAGGTAACAAATTTTGGAAATGGCCCGAAAAACGTGACGAGATATGGTATCAAGCCAACATGgtggtaaaaaaaattatggagcCGAAACTGGTGACCAAACGAGGCCATTATGACGTGCCAGAATGCCAAGATTTGTCTGATTttgtaatgtaa
- Protein Sequence
- MPRSYKKKVGGRTYQNYTKEKLQEAIKDILENGISFRSAQDKYNIHRNTLHNKIKKKHSGAKTGRPTIFTPEEETEFVKHIISMSSYGFPVTPFELRCIVRSYLNRIGKNVPCFKENLPGVDWVNSFIKRHKSVLSHRFAKNIKNARAAIDAIDHLENEVKDVPAANIWNYDETNLVDDPGSKKVIVRRGCKYPEVIRNSTKACTSIMVAGNAAGDIAPVYVNYKAKKLWQTWIEGGPEGARYNSSKSGWFDTQSFEDWFMHLMLPILKKQEGKKVVIGDNLSSHLNMEVVKACEDNNISFVCLPPNATHLFQPLDVAYFRPMKVNWRKILSDWKATHHGSRCPTIPKDCFPRLLKKLFDVLEPSNKENLKSGFRKCGISPINRSMVLDRLPKNILDTSLQEIGNVSESFVDFLISSRETQTVVKPRQKRKAVNVVPGKGVTCTDLEVGEQPSTSNISAGSSNAKNLGRKRQRIPVARNSSSSESEDNFSLRDSSCSPYNEMDEIEDLENMLPHQPELKTLREMIYENGSSSEEEVDTYKEGDYVIVKYEGQYFPGKITVKDNNTFLISTMTKGNKFWKWPEKRDEIWYQANMVVKKIMEPKLVTKRGHYDVPECQDLSDFVM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00790187; iTF_00790188; iTF_00790189; iTF_00044398; iTF_00790190; iTF_00044399; iTF_00790191; iTF_00044400; iTF_00790192; iTF_00044401; iTF_00790193; iTF_00044402; iTF_00790194; iTF_00044403; iTF_00044404; iTF_00044405; iTF_00044406; iTF_00044407; iTF_00044408; iTF_00044409; iTF_00044410; iTF_00044411; iTF_00044412; iTF_00044413; iTF_00044414;
- 90% Identity
- iTF_00790187; iTF_00790188; iTF_00790189; iTF_00044398; iTF_00790190; iTF_00044399; iTF_00790191; iTF_00044400; iTF_00790192; iTF_00044401; iTF_00790193; iTF_00044402; iTF_00790194; iTF_00044403; iTF_00044404; iTF_00044405; iTF_00044406; iTF_00044407; iTF_00044408; iTF_00044409; iTF_00044410; iTF_00044411; iTF_00044412; iTF_00044414; iTF_00044413;
- 80% Identity
- -