Arep003111.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Alcis repandata
Gene Symbol
-
Assembly
GCA_949125135.1
Location
OX421223.1:10011744-10013633[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5.5e-10 2.2e-07 31.2 0.0 1 44 18 62 18 63 0.90

Sequence Information

Coding Sequence
ATGCCTCGTTCGTACAAAAAAAAGGTTGGTGGGCGTACTTACCAAAATTACACCAAAGAAAAATTACAGGAAGCAATCAAGGACATACTAGAAAATGGAATATCTTTTAGAAGCGCgcaagataaatataatatacatcgcAACACTCTTCATAAcaagatcaaaaaaaaacactcaggtGCTAAGACGGGACGTCCCACTATTTTCACCCCCGAAGAAGAAACAGAATTTGTGAAACACATAATTTCTATGTCAAGTTATGGTTTTCCTGTAACCCCTTTTGAATTGAGATGTATTGTACGATCATACCTTAACAGAATCGGCAAAAACGTCCCttgtttcaaagaaaatttgCCTGGTGTTGACTGGGTTAACAGCTTTATTAAGCGACATAAATCAGTACTGTCGCACCGATTCGCCAAAAACATTAAGAACGCTCGTGCTGCCATAGATGCTAACGTGGTAAACAATTTCTTCGACCACTTAGAAAACGAGGTGAAAGACGTGCCTGCTGCAAACATTTGGAATTATGATGAAACTAATCTAGTAGATGATCCCGGTTCAAAAAAAGTTATAGTAAGAAGAGGCTGTAAATATCCGGAAGTCATTCGAAACTCGACAAaagcatgtacgtctataatgGTTGCTGGGAATGCTGCAGGTGATATTGCCCCAGTTTATGTTAACTACAAGGCAAAGAAACTTTGGCAAACTTGGATTGAGGGAGGCCCTGAAGGAGCTCGCTACAATAGCAGCAAGTCAGGATGGTTCGACACACAATCTTTCGAAGATTGGTTCATGCATTTAATGCTTCCGATTCTAAAAAAGCAAGAGGGTAAAAAAGTCGTGATCGGAGATAACCTCAGTTCTCATCTAAACATGGAGGTTGTGAAAGCTTGCGAAGATAACAACATCTCTTTCGTGTGTCTTCCACCTAACGCAACACACCTCTTCCAGCCACTTGATGTGGCTTACTTTCGACCAATGAAAGTCAATTGGCGAAAAATTTTATCAGACTGGAAAGCAACACATCATGGTAGCCGATGCCCCACAATACCCAAGGATTGTTTTCCGAGACTCCTGAAGAAGTTGTTTGATGTGTTAGAACcatcaaataaagaaaacctaAAATCTGGGTTTCGTAAATGTGGGATATCACCAATTAACAGGAGTATGGTTCTGGATCGTCTTCCAAAAAATATTCTGGATACCAGTCTTCAAGAAATTGGGAATGTCAGCGAATCGTTTGTAGATTTTCTGATAAGTTCAAGAGAAACTCAAACCGTGGTTAAGCCAAGACAAAAACGCAAAGCTGTTAATGTCGTCCCAGGCAAAGGCGTTACTTGTTCGGACTTAGAAGTCGGGGAGCAACCTTCAACATCAAATATAAGTGCTGGTTCTTCAAACGCAAAGAATTTAGGGAGGAAACGTCAAAGACTCCCAGTTGCCAGGAACTCATCATCTTCAGAAAGCGAAGATAACTTTTCTCTCAGAGATAGCAGCTGCAGCCCATATAATGAAATGGATGAAATTGAAGATCTAGAGAATATGCTACCCCATCAGCCTGAATTGAAGACCCTTAGAGAGATGATTTATGAAAATGGAAGCTCGAGCGAAGAAGAGGTAGATACATACAAAGAAGGCGATTATGTTATTGTCAAATACGAAGGGCAATATTTCCCGggaaaaattacagtaaaagaTAATAACACCTTTTTAATCTCCACAATGACCAAAGGTAACAAATTTTGGAAATGGCCCGAAAAACGTGACGAGATATGGTATCAAGCCAACAtggtggtaaaaaaaattatggagcCGAAACTGGTGACCAAACGAGGCCATTATGACGTGCCAGAATGCCAAGATTTGTCtgattttgtaatgtaa
Protein Sequence
MPRSYKKKVGGRTYQNYTKEKLQEAIKDILENGISFRSAQDKYNIHRNTLHNKIKKKHSGAKTGRPTIFTPEEETEFVKHIISMSSYGFPVTPFELRCIVRSYLNRIGKNVPCFKENLPGVDWVNSFIKRHKSVLSHRFAKNIKNARAAIDANVVNNFFDHLENEVKDVPAANIWNYDETNLVDDPGSKKVIVRRGCKYPEVIRNSTKACTSIMVAGNAAGDIAPVYVNYKAKKLWQTWIEGGPEGARYNSSKSGWFDTQSFEDWFMHLMLPILKKQEGKKVVIGDNLSSHLNMEVVKACEDNNISFVCLPPNATHLFQPLDVAYFRPMKVNWRKILSDWKATHHGSRCPTIPKDCFPRLLKKLFDVLEPSNKENLKSGFRKCGISPINRSMVLDRLPKNILDTSLQEIGNVSESFVDFLISSRETQTVVKPRQKRKAVNVVPGKGVTCSDLEVGEQPSTSNISAGSSNAKNLGRKRQRLPVARNSSSSESEDNFSLRDSSCSPYNEMDEIEDLENMLPHQPELKTLREMIYENGSSSEEEVDTYKEGDYVIVKYEGQYFPGKITVKDNNTFLISTMTKGNKFWKWPEKRDEIWYQANMVVKKIMEPKLVTKRGHYDVPECQDLSDFVM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00790186;
90% Identity
iTF_00790186;
80% Identity
iTF_00044414;