Hchr014058.1
Basic Information
- Insect
- Hemistola chrysoprasaria
- Gene Symbol
- -
- Assembly
- GCA_947063395.1
- Location
- OX346721.1:15178246-15186365[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.3e-10 8.3e-08 32.5 0.0 4 39 169 205 166 209 0.89 2 4 2.2e-11 1.4e-08 35.0 0.4 2 39 221 258 220 262 0.92 3 4 1.3e-15 8.5e-13 48.5 0.3 2 45 276 320 275 320 0.96 4 4 7.7e-18 5e-15 55.6 0.0 1 41 327 368 327 372 0.94
Sequence Information
- Coding Sequence
- ATGCCCGGGAACGGATCAACTCAAGTGAAATGCGAGCCACTTTCTGATGAAGAAGATAGTAGCCCGAAACTatccaatatatttattaatctcTCCGGATATAATACTGTAAAAGCAGAAGAACTGAGTGATGGAAACATTTCATCTCTGTTGCACCATTTACAACCGCCAAGTGGTCTGGAGGAGTTGGCACCGCTGGCGCCGGCGGGTCCGGCTGCGACTCCTGTTAGTGTGAAGCAGGAGCCGGGAGACACTCCTGCCATTGTGCTGGAGACACTCGAGTCTGCTCCACATAACACGGGTTGTTCTTTATTGGAAAGACACATGGCGATGATAAGTTCGACCGAAGTTCTAGACACATCCAATTTCACACCTCTTCTGGCAGTCAAGGATGAGCCATCTTTGGAAGGAGAATTACAGAACCTTAGCGGTGACGAGACGAGTGACTCGTACCGAGACATGGAGCCATCGACACGGGGCAGCCCCAAGAGTTGGACTCAGAAGGACATGGAGAATGCTCTCGAAGCTTTGAGGCACCACCACATGAGTTTAACTAAGGCTTCAACAACGTACGGCATTCCATCTACTACCCTGTGGCAGCGCGCGCACAGACTCGGCATCGACACGCCGAAGAAGGAAGGCGCGGCCAAGTCTTGGTCGGAGGCAGACCTTCGTTCTGCGTTGGAAGCCTTGAGAGCAGGGGCCATCTCCGCTAACAAGGCCAGCAAGGCTTATGGCATTCCGAGCAGCACGCTGTACAAGATAGCTCGTCGCGAGGGCATCCGGCTGTCGGCTCCGTTCAACGCGGCGCCGGTGTCGTGGCGGCGCGCGGACCTCTCGCGCGCGCTGGCCGCCATCCGCGCCGGCGCCGCCTCCGTGCAGCGCGCCGCGGCGCACTACGGGATACCCACCGgaaCACTCTATGGACGATGCAAGAGAGAAGGCATAGAACTGTCTCGATCGAACCCGACGCCCTGGTCCGAAGATGCTATGGGAGAAGCTCTCGAAGCTGTTCGAGTCGGTCAAATGTCGATCAACCAAGCGGCTATACATTACAATTTACCTTACTCTTCACTCTACGGTCGTTTCAAAAGATGCAAATACTTAGCACAgACCTCACAATTCCCCCAACAAGATCAACAGAGAGGTCCACAAATGGTAACGGATCATCAAGGacaatattatcacaatatgCAAGACCAAGATCAAATTGCCCAAAACTACGCCCAAAATGACTATATTCCCCATACATCACAAAACATTATTCAGGACTATGGAAACCAAGCAGTGTATTACAACCAAAACTTCAGTAGTATCGCTACCAGCTGA
- Protein Sequence
- MPGNGSTQVKCEPLSDEEDSSPKLSNIFINLSGYNTVKAEELSDGNISSLLHHLQPPSGLEELAPLAPAGPAATPVSVKQEPGDTPAIVLETLESAPHNTGCSLLERHMAMISSTEVLDTSNFTPLLAVKDEPSLEGELQNLSGDETSDSYRDMEPSTRGSPKSWTQKDMENALEALRHHHMSLTKASTTYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRSALEALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPVSWRRADLSRALAAIRAGAASVQRAAAHYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYLAQTSQFPQQDQQRGPQMVTDHQGQYYHNMQDQDQIAQNYAQNDYIPHTSQNIIQDYGNQAVYYNQNFSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00791117;
- 90% Identity
- -
- 80% Identity
- -