Hchr007190.1
Basic Information
- Insect
- Hemistola chrysoprasaria
- Gene Symbol
- Rfx2
- Assembly
- GCA_947063395.1
- Location
- OX346714.1:15673409-15696530[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.8e-37 2.6e-33 115.1 0.0 3 78 229 304 227 305 0.97 2 5 0.52 7.6e+03 -1.7 0.0 25 41 628 644 625 655 0.82 3 5 0.19 2.8e+03 -0.3 0.0 22 41 655 674 642 681 0.80 4 5 0.21 3e+03 -0.4 0.0 22 41 685 704 672 708 0.79 5 5 0.22 3.3e+03 -0.5 0.0 23 41 803 821 793 825 0.78
Sequence Information
- Coding Sequence
- ATGTCCGAAATGGGTTTTGAGAACGTGTTTTACTTGGAAAATTTCGAGTGTGCGGGCGACGAGGTGCTCGTGGAGTCTTCCCCGCCCGCCTCGCCTGACATGGCGGCGCGCCTCGCTGCGCCTGCACAGAGTCGGCAGGGCGGGGCGTCGCCGGacgcgggcgcgggcgccgaCAGTAGCGCGGCCTCCGTGCGGGAGCTCATCGTCATACCGGAGATCTCCAACTCCATACAGCTGCATCACGCCATACATCAGGTGTCGAGTACGGTGGTGGAAGTGAACGGAGACAGTTCAGGACACTCCAGCCCTAACGACACCGACCAGCACACGTTCATCACCGTTGCAAGTGAGGGCAGTAACGGCGTCAACTACCACGTGCAGTATGTCACTGAGCCACAGGAGATTTATACGCAAGGACATCAAATGGAGAGCCTGCGGTCGTACCCGGTGTACGGCGTGGCCACGGTGGCGGGCGGCGTGGCCGAGCCCGCGCCCGACGGCGGCTGGGGCGGGGCCTCTAGTGCCGAGTACACGGCTTATGGACTGGTGGTGGCGGGCGACGAGGCGGAGGCGCCGGCGTCCCCCGCCACGCCGGGCGCCGCGCCGGGCGCCACGCCGGGCGCCGCGCCGGGCGCCACGCCGGGCGCCGCGCCGGGCgccacgccgccgccgcgcaTGCCGCCCGCCACCGTGCAGTGGCTGCTCGACCATTATGAAACTGCTGAAGGCGTGTCCCTCCCGCGCTCCACGCTGTACGCGCACTACCTGCGGCACTGCGCCGCGCACCGCCTGGAGCCGGTGAACGCGGCCTCCTTCGGCAAGCTCATCCGCTCCGTGTTCGTGGGCCTGCGCACGCGCCGCCTCGGCACCCGCGGGAACTCCAAGTACCACTACTACGGCATCCGGGCCAAGCCCGGCCACGACGGCGCCGACGACGGGAGCGACGGGAACGATCCACAGGAGGAGGCGGAGCGCTCGAGTGGGTCCCCGGCGAGTGCGGCGAGTGCGGCGAGTGCGGCGAGTGCGGCGAGCTCGCAGCGGCCCGGCCTGCGCTCCGTGGCGGCGCCCGACCCGCCCGAGCTCCGCCTGCCGCCCGGCGCCGACCACCCGCACAACCGCGCCGACGCGCTGCGGACGCATCACCGTGAATACGGCGTACAGTTCCTGGAAGCGGTTGCGGCGCTCGACACCAACGGCGTGGAGACGTCGCGCCGAACATTCTGGCGCTCGTGCGGACAACACTGGCGCGAGTGTAGCGCGGCGCAGGCTCGGTGGCTGCGGGCCGCCGACACCAGGGTGTACCAGCGAGCCGTGGACCTGCTGCTGCCCGACGTGCTGACCGCCGTGTCCCCGCACCTCACCATGGCTATCCGCAACTTCGCCAAGAGCGTGGAGGCGGCGATATCGGCAGGGTCGAGCTCCGCCCCCCCGGCGGCGGTGCGGGCCGGCGCGGCCGCCGCCGGAGCCCTGGCCGCCGCCCTCCGCCGGTACACCTCCCTCAACCACCTGGCGCAGGCCGCGCGCGCCGTACTCACCAACCACAACCAGATACAACAGATGGTGACAGACCTGAACCGCGTGGACTTCCGCGTGGTCCGCGAGCAGGCGGCCTGGGCGTGCGGTTGCTCCTCGCAGGCTAATGCGCTCAAGATAGAAGCCGATTTCAAGGCCACGTTGTCCCGCGGAGCCTCGTTGGAGGCGTGGGCGGCGTGGCTGGAGGGCTGCGTGCGGTCGGCGCTGGCTCGCGGCTCCACGCGCGGCTCGGCGCTGCCTCGCGCGAGGCGCCTGCTGCTGCACTGGTCCTTCTACTCCAGCCTCGTCATACGGGAACTCACGCTGAGGTCCGCAGCATCGTTCGGTTCGTTCCACCTTCTGCGCTTGTTGTACGACGAGTACGTATCGTTCCTGGTGGAGAGACGTGTGGCCGCCATACTGTGCGCGCCGCCTATAGCCGTCATGCATCTTAACATTTTGTACGACGAGTACGTATCGTTCCTGGTGGAGAGACGTGTGGCCGCCATACTGTGCGCGCCGCCTATAGCCGTCATGCATCTTAACATTTTGTACGACGAGTACGTATCGTTCCTGGTGGAGAGACGTGTGGCCGCCATACTGTGCGCGCCGCCTATAGCCGTCATGCATCTTAACATTTTGTACGAGTACGTATCGTTCCTGGTGGAGAGACGTGTGGCCGCCATACTGTGCGCGCCGCCTATAGCCGTCATGCATCTTAACATTTTGTACGAGTACGTATCGTTCCTGGTGGAGAGACGTGTGGCCGCCATACTGTGCGCGCCGCCTATAGCCGTCATGCATCTTAACATTTTGTACGAGTACGTATCGTTCCTGGTGGAGAGACGTGTGGCCGCCATACTGTGCGCGCCGCCTATAGCCGTCATGCATCTTAACATTTTGTACGACGAGTACGTATCGTTCCTGGTGGAGAGACGTGTGGCCGCCATACTGTGCGCGCCGCCTATAGCCGTCATGCATCTTAACATTTTGTACGAGTACGTATCGTTCCTGGTGGAGAGACGTGTGGCCGCCATACTGTGCGCGCCGCCTATAGCCGTCATGCATCTTAACATTTTGTACGAGTACGTATCGTTCCTGGTGGAGAGACGTGTGGCCGCCATACTGTGCGCGCCGCCTATAGCCGTCATGCATCTTAACATTgatgaacaggaagaagaagacACCCCGGAAGAGAACCCCCGCCAGGAACCAGATGAAGAGGACCCCGACTGGGAGTGGGACGACGAGGAAGAGGATGATGAAGATTCCACGCCGCCTGACAACAAGAAACCTAAACTAGAAGACTAA
- Protein Sequence
- MSEMGFENVFYLENFECAGDEVLVESSPPASPDMAARLAAPAQSRQGGASPDAGAGADSSAASVRELIVIPEISNSIQLHHAIHQVSSTVVEVNGDSSGHSSPNDTDQHTFITVASEGSNGVNYHVQYVTEPQEIYTQGHQMESLRSYPVYGVATVAGGVAEPAPDGGWGGASSAEYTAYGLVVAGDEAEAPASPATPGAAPGATPGAAPGATPGAAPGATPPPRMPPATVQWLLDHYETAEGVSLPRSTLYAHYLRHCAAHRLEPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRAKPGHDGADDGSDGNDPQEEAERSSGSPASAASAASAASAASSQRPGLRSVAAPDPPELRLPPGADHPHNRADALRTHHREYGVQFLEAVAALDTNGVETSRRTFWRSCGQHWRECSAAQARWLRAADTRVYQRAVDLLLPDVLTAVSPHLTMAIRNFAKSVEAAISAGSSSAPPAAVRAGAAAAGALAAALRRYTSLNHLAQAARAVLTNHNQIQQMVTDLNRVDFRVVREQAAWACGCSSQANALKIEADFKATLSRGASLEAWAAWLEGCVRSALARGSTRGSALPRARRLLLHWSFYSSLVIRELTLRSAASFGSFHLLRLLYDEYVSFLVERRVAAILCAPPIAVMHLNILYDEYVSFLVERRVAAILCAPPIAVMHLNILYDEYVSFLVERRVAAILCAPPIAVMHLNILYEYVSFLVERRVAAILCAPPIAVMHLNILYEYVSFLVERRVAAILCAPPIAVMHLNILYEYVSFLVERRVAAILCAPPIAVMHLNILYDEYVSFLVERRVAAILCAPPIAVMHLNILYEYVSFLVERRVAAILCAPPIAVMHLNILYEYVSFLVERRVAAILCAPPIAVMHLNIDEQEEEDTPEENPRQEPDEEDPDWEWDDEEEDDEDSTPPDNKKPKLED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -