Basic Information

Insect: Hemicrepidius niger
Gene Symbol: RREB1
Assembly: GCA_963082805.1
Location: OY720160.1:34978211-34985143[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00048 0.048 15.2 0.8 1 23 90 112 90 112 0.96

2 16 0.001 0.1 14.2 0.3 1 23 125 147 125 147 0.98

3 16 1.3e-05 0.0013 20.2 3.9 1 23 153 175 153 175 0.98

4 16 3.4 3.4e+02 3.1 0.1 1 20 258 278 258 282 0.70

5 16 0.0059 0.58 11.8 3.3 2 23 288 310 288 310 0.96

6 16 0.1 10 7.9 0.7 1 20 360 379 360 381 0.95

7 16 0.11 11 7.8 0.1 1 23 518 540 518 540 0.96

8 16 1.2e-05 0.0012 20.3 0.8 1 23 549 571 549 571 0.99

9 16 0.0013 0.13 13.9 3.1 1 23 577 600 577 600 0.97

10 16 0.00044 0.044 15.4 1.4 1 23 1022 1045 1022 1045 0.96

11 16 0.0017 0.17 13.5 0.4 2 23 1291 1312 1290 1312 0.97

12 16 0.19 19 7.1 6.3 1 23 1318 1341 1318 1341 0.97

13 16 0.019 1.9 10.2 1.2 1 20 1369 1389 1369 1390 0.95

14 16 0.24 23 6.8 0.5 1 23 1459 1482 1459 1482 0.92

15 16 0.025 2.5 9.8 0.4 3 23 1530 1550 1528 1550 0.93

16 16 0.017 1.7 10.4 5.9 1 23 1556 1578 1556 1578 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00048	0.048	15.2	0.8	1	23	90	112	90	112	0.96
2	16	0.001	0.1	14.2	0.3	1	23	125	147	125	147	0.98
3	16	1.3e-05	0.0013	20.2	3.9	1	23	153	175	153	175	0.98
4	16	3.4	3.4e+02	3.1	0.1	1	20	258	278	258	282	0.70
5	16	0.0059	0.58	11.8	3.3	2	23	288	310	288	310	0.96
6	16	0.1	10	7.9	0.7	1	20	360	379	360	381	0.95
7	16	0.11	11	7.8	0.1	1	23	518	540	518	540	0.96
8	16	1.2e-05	0.0012	20.3	0.8	1	23	549	571	549	571	0.99
9	16	0.0013	0.13	13.9	3.1	1	23	577	600	577	600	0.97
10	16	0.00044	0.044	15.4	1.4	1	23	1022	1045	1022	1045	0.96
11	16	0.0017	0.17	13.5	0.4	2	23	1291	1312	1290	1312	0.97
12	16	0.19	19	7.1	6.3	1	23	1318	1341	1318	1341	0.97
13	16	0.019	1.9	10.2	1.2	1	20	1369	1389	1369	1390	0.95
14	16	0.24	23	6.8	0.5	1	23	1459	1482	1459	1482	0.92
15	16	0.025	2.5	9.8	0.4	3	23	1530	1550	1528	1550	0.93
16	16	0.017	1.7	10.4	5.9	1	23	1556	1578	1556	1578	0.98

Sequence Information

Coding Sequence: ATGCAAGGCATTGTATACGTGCCAGATTGTCATCTTCAGACTGGTTCGCCACCACCAAATAGGATCAGTGtTCCTCAGACGAATATGGACGTATCGCCAGAGCTAGATTTACATGCCAAAGAAATAATCGTAAACCAAAGTAATCAAAGCGACTCAGGTATATTATCAGCGACAGGAAATTCCACGTATCTGGAAATGGACCGCTCAAATCGTTTCGAAAACGAAGATACCGATAATCGCAGCAATTGCAGTTCTCCCGACCGCAAATACCTTTGCCCAATTTGTGAAACTATGTTAACTTCCCAACACGAATTTACTGTACATATCAGATCTCATAATAACGAATCGGAAGTGCAAGATCCTGAAAAAGGCTTCTCGTGTCGCATTTGTCGCAAAGGACTAAGTTCGAGTGCGAGCTTAGACCGACACATGTTAATACACAGCGGAGAGAGGCCTTTTATGTGCAAGTACTGCGGAGATACGTTTACCACTAACGGAAATATGCACCGGCACATGCGAACCCACACCAACAGAACCGAAAATTACGAGTCGGACGGAAGCACCGATAGTGGTGCAAGTAGCGGCTCAAAAACGGTcgaatataataacaataagatATCATCAAAAACTGATAGCAATAAAAGCACCTTACTGGAACTCAAAACCGGATTGGATaataaacgaaaatatattAACTACGAAGCAGAGGAAACTTATAAGCAATCTCGAATCAAACTCGAACATAACTCTGACAATGTTCAACATCAAAACTATACATGCCCTGTATGCGATAGggatgattttaattcaatcgATACCTTAGAAATGCACTTAGAAGACAATCATCCTGATTATCCCGCAAAGTGCAATCATTGCagtcaaattttcaaaaacaacaaGCTTCTTAACGAACATAAGAGCATGGTTCATTACAACGAAGAGAATGGTAAACACCCAAGAAATTCGGTGGTTGGTTTTAAAGACTTGACGTTTGTAGATTTTTCAAGTCAAAAATTTCCATACATAGCCAAATACGAATGCGAGAAAAATCTACACAAAGTTGCGAGTGGATTAAAGTTTCAATGCGAAAGGTGCTCCCGAGCTTTTCCTTGCTCCAGTTCTCTTGAAATACATCAATCCGATTGCATAACTGGTTTGGATCTATccgtcaaaaataaaaataatttgagtaCCAACAAAACCGTAGAAAAAGACGTACGAAGAAATGACTTTTTCGCAAGACtagatttgcaaaataattctCAAGAGCAACCTGAATCACCTCAACCTAATaacgataaaattttaaaacttccaCCGAACCCATTCCCAACTACAGATAACAACAAAGACTTAGCTGACATACAATCAATAATCTCGATGACAACAAACGGAACATTGCTTCAACAACTACAAGCCAAAACTATTGATGTAAATTCTACTCTACGTTCCATTTGCTCAGAAAGTgaacaagaaataaaacaagaacATGAGGAAGAATCCCAAGATTTATTTGCTGCTGAATTTCGAAAGATGAAGTTAAGGGGTGAATTTCCTTGTCGTCTGTGTACTGCTGTTTTTCCAAATTTACGAGCCTTAAAAGGACACAATCGTGCACATTTAAACGGAAACAATAACGGAACTTACAGGTGCAATATGTGTCCTCATTCGTCGATAGACAAAGCTGCTCTTATACGCCATATGAGAACGCATAACGGAGATAGACCATACGAATGTTCATTGTGTAACTACGCTTTTACAACTAAAGCTAATTGCGAGAGGCATTTACGAAATCGACATGCTAAAAGTACAAGGGAAGAAGTTAAAAAATCTATAATTTACCATCCTTCAGAAGATCCCAGCAACGAGGAAATTAGCAAAATGCTTGCACGAGAAGATACCAAAGGAAGCGTGCCTATATccactcctaaaattattagtGAAATTATTccagaaaaagtaaaaattgttgCAGCCGAAAGTTTTCTATCTACACCTGATCTTCCAATACTTTTGCCTGAGAAGAGTGCTAAGGATGTTACCAGTCCAGTTTCAATGTTAAACGTAAAATGTGTTTCACCGTTCAATCTCTCCAGACAGCTTTCCGGAACTAGATTAGATGTTTCCAATATTATTCATAACGAAAATTCTTTGCAAGACCATAACATGGTTAAAATGGAGCCAGTTCCTCCATACCTACCACCATTCACTTTTTCCCCTAAAATTACTAATACTTCAACACCTCAGAAAGTAACTCCGAAAATCCATGTAAAAAATCTAGAATCCATGCAGTGTACTGAACCCGACGaggaaaataaatatacaccagCAGATCCTCGGTCTCTAGATTGTGATGATCAACCAATTGACTTGGTGTTAGATTTAAGTAAAAAGAAAGTGGAAAGTAAAGTTGAAGATCCACCAAAATCGCGTTTAGAAGATACCCCGCAAGATTTATCTAAAAAGAATTCAGAAAGTGGACCGTCTAACATGAGCGAAATTTTGGCAAGACAACTACTGAAAAATACTCCAAAAATAGACCCTGCTAGTTTATACGCTTCTCAGTTGGCAATTTACAGAAACGGATTTCCGGGATTACATGGTTTATCAACGTGGCCATTTTCTCTTAATCCTATGCTGTTCCAAGCAATTCCTTCTCCAATATTTCCACAAGATCCTCATGAAATTAAAGAACGATTACAAAGATTGCAACTTTGTGGAGGGGGGATGGTTATGGATAATTTCGCTGAAAGATTAAAGAACTACCATCAACAGTCTTTATCCAATAatgcttttaataattttaagttaaatGATATCAATTCAGAACTAAACGTTCACGAAAATAGCTACACAAATCATAGTTCAACAAAATCTGAAGAAATAAAACCGCTTACTTTAAATATTGATCAAAATTTAtctgataatttaattaaaatgcaaaGTCCTATTCCAATGTCCAAATCTGAGCCTATGGCTTCGCCTAATTCAGTAAAAATGGTTATTAAGAATGGGGTGCTTAtgccaaaacaaaaacaaagacgCTATCGTACTGAAAGACCATTTTCCTGCGAATACTGTTCAGCACGTTTTACACTGAGATCTAATATGGAACGTCATATTAAACAACAACATCCCCAATTTTGGTCTCAACGACAACGATCAAATGTTGGGGGAGGAAATAGGAAAATACAATCTGGTAGCGCAAACTCACGCAATAGTTATTGCAATATAAATATTCCCAACTATGACACACCAAAGAAACAAACTTATGATGAGACCAAAGAACAGATAtcggaaaaaataaaatacgttaTATTAGCGCAGCATTTAAAAGCAGCTCAGAATTATAAAGCCACAAACAACCAAgatcagaaaattaaagaagaagaTGAAGATTATGAATTGGTTATAGATGAAAAAGATGAAGGGGTTAGTAAGAATGAGGAACAAGAAAAAGACAGTAAAAACAGCAATAAGGAAAGTACTTTGTATGGAAATATCTGCAAGACACAAATTTTGGAAGAAAAACTTAAGCAGTTTCAATCTAAACAGTATACAGAGACTTCAAACATGGAGACTGTTGAGTGTTCAAATACCGTAGCGAAAAATGAAGATGCCCAAGATTTGGTTCCCGTAGCTCGTTTGTTAGACAACGCATCGCAGCAACCTTTTAAGGAGTATTTCCGTAGAGGGGAAGGCCGTGAAGGTGGCATAAGCGAAGAAGATGAAGAAGGTCTTGTTGCCAGTAGCAGTACCAGCGATGGGAACAATTCTGGAACTGATGAAAATAGGTCAGAATCTGAAAACACAACAACCCAAGCACCTACCAAGAAAAAATCTGCATATTCCTTGGCTCCGAATCGTGTTAGCTGTCCGTATTGTCAACGTAAATTTCCATGGACATCCTCTCTACGTAGGCATGTTCTGACACATACCGGacagaaaccatttaaatgtagCCATTGCCCCTTACTTTTTACAACTAAATCAAACTGTGATCGTCATTTACTTCGAAAACATGGAAATTCTGCTACAGCCATTAACAACGATCTCCCTAATAATAGTACCAATTATATGATGCGAAACGTCCCAGAACGTCCTTTCAAGTGTTCCAATTGTCCTAGTAGCACATTTTCCACTTACTCGAACCTTAAAAAGCATATCAGTTGCAAACATTCCTCGCAAGGTGCACAAAGCGATGACGCTCGTTCTCAAATTTCCACTGGTTACGAAGCAGGAAGTTCGGAGGACGAGAAAATGTCACAAGGTGAGCAGAAAAGTGATTGGGATAAACAAATCACATCGCATAATAAAACCACCCTTCCAAGTTCTGAAGTGCAAAACCCTCATTTACAAAATTCTGATTTGCCATTCAAGTGCCACTTGTGTGATAATTCTTTTGGTGAAAGACCTGATGCGATTGATCACATAAAAGACAGACACACCACAGAATACGAATTACTCATGTCCAAGAATGCATTTGATGCAAATGCCACTACTCCAGATGATAACCCTAATCATGACGATAATGAAGACAACGAAGTTCGAGGAAAGTTTCCGGATTATGCCAACAGAAAAGTAATTTGTGCCTTTTGCATGCGTCGGTTCTGGTCTGCTGAAGATTTAAGACGACATATGCGTACACATACAGGAGAGCGACCTTTTAGCTGTGATATCTGCTATCGTCGATTTACTTTGAAGCACAGTATGCTGAGACATCGTAAAaaacacaatttaaaatttgaaaatgataatttaaacaGTGATGAAGATATAAATAATGCAAATTTAGCTCCTGCGTTCGATAAATTTGTTAAAGGTAACAATAATAATCTGGTAAGTAAAACTGATGAATCTGATGGTACGGAAGGTAGTGACCTAATCAGCAACCTGTTGGGTATTAGAGATCGCTCCATTATAGATCAAGTTCTAACAGCATCTGCAGATGATGCTGCTAAGCTGTTAGGAGTAAAAGGGGGCGAGTAG
Protein Sequence: MQGIVYVPDCHLQTGSPPPNRISVPQTNMDVSPELDLHAKEIIVNQSNQSDSGILSATGNSTYLEMDRSNRFENEDTDNRSNCSSPDRKYLCPICETMLTSQHEFTVHIRSHNNESEVQDPEKGFSCRICRKGLSSSASLDRHMLIHSGERPFMCKYCGDTFTTNGNMHRHMRTHTNRTENYESDGSTDSGASSGSKTVEYNNNKISSKTDSNKSTLLELKTGLDNKRKYINYEAEETYKQSRIKLEHNSDNVQHQNYTCPVCDRDDFNSIDTLEMHLEDNHPDYPAKCNHCSQIFKNNKLLNEHKSMVHYNEENGKHPRNSVVGFKDLTFVDFSSQKFPYIAKYECEKNLHKVASGLKFQCERCSRAFPCSSSLEIHQSDCITGLDLSVKNKNNLSTNKTVEKDVRRNDFFARLDLQNNSQEQPESPQPNNDKILKLPPNPFPTTDNNKDLADIQSIISMTTNGTLLQQLQAKTIDVNSTLRSICSESEQEIKQEHEEESQDLFAAEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLNGNNNGTYRCNMCPHSSIDKAALIRHMRTHNGDRPYECSLCNYAFTTKANCERHLRNRHAKSTREEVKKSIIYHPSEDPSNEEISKMLAREDTKGSVPISTPKIISEIIPEKVKIVAAESFLSTPDLPILLPEKSAKDVTSPVSMLNVKCVSPFNLSRQLSGTRLDVSNIIHNENSLQDHNMVKMEPVPPYLPPFTFSPKITNTSTPQKVTPKIHVKNLESMQCTEPDEENKYTPADPRSLDCDDQPIDLVLDLSKKKVESKVEDPPKSRLEDTPQDLSKKNSESGPSNMSEILARQLLKNTPKIDPASLYASQLAIYRNGFPGLHGLSTWPFSLNPMLFQAIPSPIFPQDPHEIKERLQRLQLCGGGMVMDNFAERLKNYHQQSLSNNAFNNFKLNDINSELNVHENSYTNHSSTKSEEIKPLTLNIDQNLSDNLIKMQSPIPMSKSEPMASPNSVKMVIKNGVLMPKQKQRRYRTERPFSCEYCSARFTLRSNMERHIKQQHPQFWSQRQRSNVGGGNRKIQSGSANSRNSYCNINIPNYDTPKKQTYDETKEQISEKIKYVILAQHLKAAQNYKATNNQDQKIKEEDEDYELVIDEKDEGVSKNEEQEKDSKNSNKESTLYGNICKTQILEEKLKQFQSKQYTETSNMETVECSNTVAKNEDAQDLVPVARLLDNASQQPFKEYFRRGEGREGGISEEDEEGLVASSSTSDGNNSGTDENRSESENTTTQAPTKKKSAYSLAPNRVSCPYCQRKFPWTSSLRRHVLTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNSATAINNDLPNNSTNYMMRNVPERPFKCSNCPSSTFSTYSNLKKHISCKHSSQGAQSDDARSQISTGYEAGSSEDEKMSQGEQKSDWDKQITSHNKTTLPSSEVQNPHLQNSDLPFKCHLCDNSFGERPDAIDHIKDRHTTEYELLMSKNAFDANATTPDDNPNHDDNEDNEVRGKFPDYANRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICYRRFTLKHSMLRHRKKHNLKFENDNLNSDEDINNANLAPAFDKFVKGNNNNLVSKTDESDGTEGSDLISNLLGIRDRSIIDQVLTASADDAAKLLGVKGGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00399862;
90% Identity: -
80% Identity: -