Basic Information

Insect: Hemicrepidius niger
Gene Symbol: -
Assembly: GCA_963082805.1
Location: OY720167.1:21700396-21701835[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.011 1.1 11.0 2.5 2 22 113 133 112 133 0.95

2 12 0.00051 0.051 15.2 3.4 1 23 140 162 140 162 0.96

3 12 4.4e-07 4.3e-05 24.8 0.6 1 23 168 190 168 190 0.99

4 12 5.3e-07 5.3e-05 24.6 2.1 1 23 196 218 196 218 0.99

5 12 3.8e-05 0.0038 18.7 1.1 1 23 224 246 224 246 0.98

6 12 0.0016 0.16 13.6 0.5 2 23 256 277 255 277 0.96

7 12 0.0002 0.02 16.4 2.4 1 23 284 306 284 306 0.97

8 12 7.8e-08 7.8e-06 27.2 3.9 1 23 315 337 315 337 0.99

9 12 0.012 1.2 10.9 1.9 1 23 343 365 343 365 0.95

10 12 7.8e-05 0.0078 17.7 1.0 1 23 371 393 371 393 0.97

11 12 8e-06 0.00079 20.9 1.2 1 23 399 421 399 421 0.98

12 12 8.6e-05 0.0086 17.6 0.9 3 23 429 450 427 450 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.011	1.1	11.0	2.5	2	22	113	133	112	133	0.95
2	12	0.00051	0.051	15.2	3.4	1	23	140	162	140	162	0.96
3	12	4.4e-07	4.3e-05	24.8	0.6	1	23	168	190	168	190	0.99
4	12	5.3e-07	5.3e-05	24.6	2.1	1	23	196	218	196	218	0.99
5	12	3.8e-05	0.0038	18.7	1.1	1	23	224	246	224	246	0.98
6	12	0.0016	0.16	13.6	0.5	2	23	256	277	255	277	0.96
7	12	0.0002	0.02	16.4	2.4	1	23	284	306	284	306	0.97
8	12	7.8e-08	7.8e-06	27.2	3.9	1	23	315	337	315	337	0.99
9	12	0.012	1.2	10.9	1.9	1	23	343	365	343	365	0.95
10	12	7.8e-05	0.0078	17.7	1.0	1	23	371	393	371	393	0.97
11	12	8e-06	0.00079	20.9	1.2	1	23	399	421	399	421	0.98
12	12	8.6e-05	0.0086	17.6	0.9	3	23	429	450	427	450	0.97

Sequence Information

Coding Sequence: atggcCTTAATACAACCAGAccttaataattcattaaaagaAGATACAAACCGTGGAAGTTTTGAAGAAGTTGTAGTTAAACAAGAACGAAGTGAAAATTTAATACCAGAACCTTTAGTTGTAGTAGATAAAGCCTGTATAGAAATTTCAAGAAACGTTAAGAAAGAATTACCCTCAGATAATGAAGAATCCTCTCGAGAAAGTACATCATCCCCTGAACAAATTAAACATGAAGCAAACTCGGAAGACAGTGACGTATCGCAAAACGGTGAAGAACTTCACCGTGATGAAAAATTAGCAATATCCTCATCGACAGGAGACAGTGGGATACCATTGAAATGCAGAGTTTGCCATAAAGGTTTTACAACTTTTAAACAGTTCGATTATCATATAAAAACACCTGCACGTGATCGAACATTTGCTTGTTGTGCATGTAACAAGACATTTCGTGATATGACTCAGTTAAATGTGCACACTAGGAAgcacactggtgaaaagccttacGAATGTAAAATTTGTGCaaagaaattttcaataaacggaaatttaaataaacatatgCGTATACATACAGGTGAGAAAAGGTTTACGTGTGATATTTGCGACAGAAAATTCAGTCAGTTTGCCCACCTTGAAGATCATATGCAGACACATTCCGCTGAGCGTCCTTTTGTCTGCGATCAATGTGATAGCGGATTTAAAACGAAAGCTCGGTTACGTAAACACATTAAATCACATGATAAAGAAATTAGGAAGAAAAATATACCTTGTCAGATTTGTTTTAGAACATTTTGGAGCTCAAAACAGTTAATGATTCATATGAGTCGTCATACAAACAGTGAATATCCGTTTCAATGCATAgtttgtgaaaaaaaatttaaagaatattcCAATTATCAAACTCATTTACGTACTCACAAACAACATCCTGGGATAAGGGCTTATAAATGTCATTTATGTGGGAAAGCGTTTGCTTCTTCAAGTCATTTAAGAAGACACGTTAATTCCCATGCAGGATTAAAACCATACCTTTGCGATTTATGCATGCGAGCTTTTCCTTGTGCTCAGAATTTAAAAAGGCATATGAAAACACATACAGGGGAAAAGCCACATGTTTGTGAGACTTGTAAAAAAGCATTTCTAAcggttgaaaatttaaacagacATATTCGGATACATACAGGGGAAAAACCATTTCCTTGTCCAACATGTGGGAAGAGATTTGCACATAGTACAACAGTTAAAGAGCATTTAAGGTTGCATACAGGGGAGAAACCATATGGTTGTAGTATTTGTGATAGACGGTTCGgtatgaataaattattatacagaCATATTCGTACAAGACATCCTGAACATGcaggaattataattaaaagtgaaaatCACCATCCTATACAATTTGTTGATATTAAGAAGGAACCTTTGGACAGTTCTTAA
Protein Sequence: MALIQPDLNNSLKEDTNRGSFEEVVVKQERSENLIPEPLVVVDKACIEISRNVKKELPSDNEESSRESTSSPEQIKHEANSEDSDVSQNGEELHRDEKLAISSSTGDSGIPLKCRVCHKGFTTFKQFDYHIKTPARDRTFACCACNKTFRDMTQLNVHTRKHTGEKPYECKICAKKFSINGNLNKHMRIHTGEKRFTCDICDRKFSQFAHLEDHMQTHSAERPFVCDQCDSGFKTKARLRKHIKSHDKEIRKKNIPCQICFRTFWSSKQLMIHMSRHTNSEYPFQCIVCEKKFKEYSNYQTHLRTHKQHPGIRAYKCHLCGKAFASSSHLRRHVNSHAGLKPYLCDLCMRAFPCAQNLKRHMKTHTGEKPHVCETCKKAFLTVENLNRHIRIHTGEKPFPCPTCGKRFAHSTTVKEHLRLHTGEKPYGCSICDRRFGMNKLLYRHIRTRHPEHAGIIIKSENHHPIQFVDIKKEPLDSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00399789;
90% Identity: -
80% Identity: -