Hnig024818.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Hemicrepidius niger
Gene Symbol
-
Assembly
GCA_963082805.1
Location
OY720164.1:8487702-8490937[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.39 39 6.1 7.2 2 23 179 200 178 200 0.95
2 16 1.8e-05 0.0018 19.7 6.8 1 23 205 227 205 227 0.99
3 16 6.5e-05 0.0065 18.0 5.1 1 23 233 255 233 255 0.97
4 16 0.00021 0.021 16.4 1.1 1 21 261 281 261 282 0.94
5 16 2.6e-05 0.0026 19.2 0.8 1 23 289 311 289 311 0.96
6 16 0.00029 0.029 15.9 0.3 1 23 486 508 486 508 0.96
7 16 2.5e-06 0.00025 22.4 5.9 1 23 514 536 514 536 0.97
8 16 1.1e-06 0.00011 23.5 3.5 1 23 542 564 542 564 0.98
9 16 3.7e-05 0.0037 18.8 1.1 1 23 570 593 570 593 0.95
10 16 0.053 5.3 8.8 0.9 1 23 605 627 605 627 0.97
11 16 0.00048 0.048 15.2 4.8 1 23 633 655 633 655 0.98
12 16 2.6e-06 0.00026 22.4 0.5 1 23 662 684 662 684 0.96
13 16 5.4e-06 0.00054 21.4 1.0 1 23 690 712 690 712 0.98
14 16 5e-07 5e-05 24.6 0.9 3 23 720 740 718 740 0.96
15 16 8.6e-05 0.0086 17.6 0.1 1 23 746 768 746 768 0.99
16 16 0.046 4.6 9.0 2.1 1 23 773 796 773 796 0.97

Sequence Information

Coding Sequence
ATGGAGAATCCGGAGTatgattttaacaaaatttgccGAGTCTGCAAAAGTGAGTCCCCAAGTATGCGATCTGTTTTTGAGGATGACAAGAAGGATAATCAGAGTCCCCGAATTGACGAGATGCTAATGGCATGTACTGCAGTTATGATAAGCTGCGGAGACGGATTACCAGATTTGATATGTCAGGCTTGTACAGTAAATCTCAACAATGCTTACCAATTCAAAAAGCTGTGCGAAAGCACAGATTCAAGTTTTCGAGAGTTACTTCGAGAGGTGAGTGGCAACGAAATCGTAAAAGAAGAGCCTCAACAGTCCCAATTTAATGATCCCGTTGAAGCAGTCGAATCTGAGACCTCTGTACTAAATGATATCAACACGGTTATTAACGATATGGTTGATGGAGTTACCTCACAAGTAGAGGAAGAAGAAGACAATAATTATACTACTATGAAAACAGATCCAGATGAAGAAACTTACGAATGTACAGTAAGCAGTGATTATATTcagtttttagaaaataatcagTTACTTTTAACTTGTCGTACATGTACGAAATGTTTTACAACCTTAGATGGTTTGAAATGTCATAAACGGCTCCATACAGGAAGTTTATTCAAATGTAAAGAATGTGGTAAGCAGTACACTAGACAAAATCACCTTCACCGGCATGAAATGACGCATGGACGTAGAAAAATCCACGTCtgcaaaatttgtaataaaacctTAACAAGATTTGAACATCTTAAACGTCATTTAATAACACATTTGAAGGAAAAACCTTTCAGCTGTAGTACATGTAATCGTGGGTTTAATCGATCGGAACATCTGGCTAATCATGTTAAACGTTGTAAAGGTGATCGTGTACATATTTGCGACATATGTAATAAAGGTTTTAATCGGGAGGATAGTTTAGAGGTACACAAACGTTTGCATGATAACAAAATGCCAGTTTTACCCACTTTAGAAAACTTGGATAACATAGATGAGCATTATGTTGAAATCGAGTGTGGGGATGGAGAGGATAATAATTGTCAAACCCCATTTTCCGATTCGGATAGTGAAGCTGATGTGGCCGACTGTTTGGAACCGCAAGtcgatatttctgaaaatacCGACTCTGTGAAGTTAACAGATATCTCTGAAGTTGCCACTCTAGGCACTGAAATATATGGAGAAGTGGACCCACAAGAATTGATAgaagaaaaatccaaattgGATGAAGAATTCTACGAGAATGAAAATGCTTCCCACTTTGAAGTCAAAGAAGAACAAGAAGACACCAACAGTGAGGACTCTGAGTACCTTCCAACAAAACCCGTGATAAAAATGAAACGTAAACGTGGACGTCCCCGCAAGCATAGTATTACTAAAATGGCAGGAAGACCAAGAGGCCGTCGtcctttacaaaaaattaaatccgaaCCAGCTGATGAACAAAATGAAGCTGAAGGGGAATTCCCATGCCCAGCTTGTGACAAAGTATTTACCAAGTTGAGCATGCTTGACAAACATGCATATAAGCATGAAGGGTTAAAAATCCACCCTTGTACAGTTTGCAATAAGAAATTTTCACGTAGTAATCACTTGAAACGTCATATGTTGTCACATTCTTCACAAAAACCGTTTTCATGTGAAATATGCACAAAAAGTTTTAACAGACGGGACCATTTAATGCAACATATGAAGTTGCATGCTAGAGAACAGGACTATAAATGTGAAATTTGTAAAAGACCTTTTGGCCGTGCTGATCATTTGGCTAAACATAAAGCTTCAAAGCATAATATAGGAGAAAAAATTATGGGAGAGAAAAAGTTTCAATGTTCTGTTTGTATGAAAGGATTTACCACTGAAAAATACAGAGATGTGCATATGAAAGGTCATATGGGGGATAAAAAGTTCCAGTGTAGAACTTGTGATAAAACATTTCTTTCGAAATCACATCTTACAGAGCATATTAAGTTTCATAATGAGAATTCTAAAAAGTTTCTATGTTCTGAATGTGGGCAAAGGTTTATTCGGAATGATTACCTTGTGATACACATGAGAAGACATAGaggagagaaaccttttaaatgtcaATATTGTGGAAAAGGTTTTCCAAGGACTACTGATCTTACTGTCCATGAGAGATACCATACGGGTGAGAAGACACATCTCTGTACCATTTGTGGAAGAGGATTTGGAAGAGCATATAATTTAACGGTTCATATGCGAACccatactggtgaaaagccttatCAGTGCACTTATTGTGAAGCTGCTTTTGCCCAAGGCAATGATTTGAAGGCACATGTAAGAAGACACACAGGGGAGAGGTTCCAATGTGAACACTGCAGTGAAAGTTTTCTAATGGGGTATTTGTTAACTCAACACAAAAGAACTGTGCATGGTTTGAATGTAGTAAGTAACATAAGAAGACTTCAACCTGTTATAAAAAATCGTCCTCAAGATGAAGCAGATGATCCACCTATAACAATTCCACTACCAGCACCAGTTGTTCCTTCTTCTGTGTTTAATGCTCAGTTACAAGCACAATTGGCTGTAGCACAACTGCAACAACATATAGCTCGGcagtag
Protein Sequence
MENPEYDFNKICRVCKSESPSMRSVFEDDKKDNQSPRIDEMLMACTAVMISCGDGLPDLICQACTVNLNNAYQFKKLCESTDSSFRELLREVSGNEIVKEEPQQSQFNDPVEAVESETSVLNDINTVINDMVDGVTSQVEEEEDNNYTTMKTDPDEETYECTVSSDYIQFLENNQLLLTCRTCTKCFTTLDGLKCHKRLHTGSLFKCKECGKQYTRQNHLHRHEMTHGRRKIHVCKICNKTLTRFEHLKRHLITHLKEKPFSCSTCNRGFNRSEHLANHVKRCKGDRVHICDICNKGFNREDSLEVHKRLHDNKMPVLPTLENLDNIDEHYVEIECGDGEDNNCQTPFSDSDSEADVADCLEPQVDISENTDSVKLTDISEVATLGTEIYGEVDPQELIEEKSKLDEEFYENENASHFEVKEEQEDTNSEDSEYLPTKPVIKMKRKRGRPRKHSITKMAGRPRGRRPLQKIKSEPADEQNEAEGEFPCPACDKVFTKLSMLDKHAYKHEGLKIHPCTVCNKKFSRSNHLKRHMLSHSSQKPFSCEICTKSFNRRDHLMQHMKLHAREQDYKCEICKRPFGRADHLAKHKASKHNIGEKIMGEKKFQCSVCMKGFTTEKYRDVHMKGHMGDKKFQCRTCDKTFLSKSHLTEHIKFHNENSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCQYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCEAAFAQGNDLKAHVRRHTGERFQCEHCSESFLMGYLLTQHKRTVHGLNVVSNIRRLQPVIKNRPQDEADDPPITIPLPAPVVPSSVFNAQLQAQLAVAQLQQHIARQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00399738;
90% Identity
iTF_00399738;
80% Identity
-