Hnig028932.1
Basic Information
- Insect
- Hemicrepidius niger
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_963082805.1
- Location
- OY720166.1:885027-887701[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.1e-108 2.9e-103 346.5 33.3 1 300 107 395 107 395 0.93 2 2 0.017 7.1e+02 0.4 6.6 120 171 393 444 392 469 0.82
Sequence Information
- Coding Sequence
- atgagtGATACAGAGACTAAGAATTCGGTGACTTCGGGTAGTCTTGATTCTCTCGCcgatatattaaataatttaagctCTGATGATGAAAATTGTGACAATAACGACCCTAAAATCCCTGCTAGTGATAACGAATCAAAACAATCGAACGAAGACGTGGAAAAAAATGAAGTAAATACCACCCCGGAAGCAAACCTTGTTGTAGTCGGAGTCACCGAAGATGAAACAGACGACACAATTGAACGGACACAGAAAACACATAAAACCCATAGTGACGATTGCGTTATTAAACAGTTCCTTGATCATTGTAACGATGATGCGGAAGCACGGTTGTTGGCACGAAGGCAAGCCAGGGCAGAAGCCAGGGATATCCGTATGAGGGAATTGGAGAGACAACAAAGAGAGCAAGAGGAAAACGCTGATCGGCAGTACGATATGCTGGAACAAACAACTCGGGCTGCTAGAACTGTAGGGAATCGTTATCTTTCAAGTCGGAGGAGTTCTGAAGATTCCCTGGAAGACGGGGGGAGCATTAGGGAGATacggCATGAACTTAAAGAAATGGAAGAGAAATTCCGGAAGGCTATGATAGCAAACGCTCAATTAGACAATGATAAAGCTTCGCAAACATATCAGTTGGAACTGCTTAAGGATAGaTTAGAAGAATTAGAAGAAGAGCATTCGCAGTTACGCCGGGAACATAGGGACAAATGCAGGGAGCACGATCAGTTGAAACGGTTAGCCGCTAGACTGAAAGATGATTTGGCTGTGACGCGAGCGGAATTAGAAGAACGTGATCGTTTAATTACCGAGAAAGGTTTAGTGATAGTAGTCGAGGATATTATTCCGTATGAAGACGATAGTGTCGGAGATGTCAGTATTACTCCTAAAAAAGCACTTGTTAGCTCTGAAAATGCTCAGTTATTGGAAAATGCAGGGGAAGGAAGTCTAGATGTCCGGTTATCGAGGTTTGCTTCAGAAAAAACTGATCTGCAAGATCAAATAAGTCACTTAAGATTAgaattagaagaagaaaaaagtaaaaaacgaaaaacaaGTGGTGTAACCCTTAACGGACCTACATCAGATCCGGATTACGAAGCTGATGATGTACaaaGAGATGCCGTGAGACAATTAGCCGATTTTAAATTTAGAGCACAAAAAGCTGAACAAGATGTAGCAACCTTACAAGCAACCGTTGCTAGATTAGAAAGTCAAGTTGTTAGATACAAATCTGCAgcggaaatttatgaaaaatccgAAGAAGCCTTAAAGCAGGAGAAACGGAAGCTTCAAAGAGAGGCAAGAGAAGCACAAAATCGGGCTGAAGAACTAGAAACGTCAAATACCCACCTGCTAAAAAGATTAGATAAACTTAAAAATGCCAAATCAACATTGCTTAAGGAACTTTGA
- Protein Sequence
- MSDTETKNSVTSGSLDSLADILNNLSSDDENCDNNDPKIPASDNESKQSNEDVEKNEVNTTPEANLVVVGVTEDETDDTIERTQKTHKTHSDDCVIKQFLDHCNDDAEARLLARRQARAEARDIRMRELERQQREQEENADRQYDMLEQTTRAARTVGNRYLSSRRSSEDSLEDGGSIREIRHELKEMEEKFRKAMIANAQLDNDKASQTYQLELLKDRLEELEEEHSQLRREHRDKCREHDQLKRLAARLKDDLAVTRAELEERDRLITEKGLVIVVEDIIPYEDDSVGDVSITPKKALVSSENAQLLENAGEGSLDVRLSRFASEKTDLQDQISHLRLELEEEKSKKRKTSGVTLNGPTSDPDYEADDVQRDAVRQLADFKFRAQKAEQDVATLQATVARLESQVVRYKSAAEIYEKSEEALKQEKRKLQREAREAQNRAEELETSNTHLLKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -