Hhel013270.1
Basic Information
- Insect
- Helleia helle
- Gene Symbol
- L
- Assembly
- GCA_963853865.1
- Location
- OY971422.1:13499980-13516472[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.4e-06 0.00014 22.9 1.7 1 23 56 78 56 78 0.99 2 18 0.58 61 5.2 5.8 1 23 84 106 84 106 0.97 3 18 7.7e-06 0.00082 20.5 4.1 1 23 112 134 112 134 0.99 4 18 2.4e-05 0.0025 19.0 0.1 1 23 140 162 140 162 0.98 5 18 1.8e-05 0.002 19.4 0.1 2 23 178 200 177 200 0.95 6 18 5.5 5.8e+02 2.1 0.1 9 23 231 246 227 246 0.93 7 18 0.28 29 6.2 0.0 3 23 302 322 301 322 0.97 8 18 0.13 14 7.3 0.0 2 23 335 356 334 356 0.91 9 18 0.00053 0.056 14.8 1.1 1 23 364 387 364 387 0.95 10 18 0.01 1.1 10.7 0.2 1 23 392 415 392 415 0.94 11 18 0.00036 0.038 15.3 0.1 1 23 475 500 475 500 0.96 12 18 0.00018 0.019 16.2 0.1 2 23 551 572 550 572 0.96 13 18 0.15 16 7.0 0.0 1 23 580 602 580 602 0.97 14 18 4.2 4.4e+02 2.5 0.5 2 23 610 631 609 632 0.90 15 18 8.8 9.3e+02 1.5 0.0 3 23 639 659 638 659 0.93 16 18 0.42 45 5.6 0.6 1 23 706 728 706 728 0.94 17 18 0.0049 0.52 11.7 0.1 1 20 736 755 736 758 0.95 18 18 0.093 9.8 7.7 0.3 1 23 765 787 765 787 0.94
Sequence Information
- Coding Sequence
- ATGCAGCTCTTTCTTCCAGAAGCGCTGGGCAGTGTGGGCAGTACCGCCGGTAGCTCCTGGCCGTCGTCCACGCCGGAGCCCTCTCCATCCTCCACCCCGTCTGCAGAGGTAGACGCTGATGAGGCGGAACCGCCCTTCACCCTAGGCGCGACGGAGCACACGCCGTACCAATGCCAGTTCTGCGACAAGGCCTTCCCACGCTTGTCGTATCTTAAGAAACATGAACAGACGCACTCCGATCAGATGCCGTTCCGCTGCGAGTTCTGCTCGAGGCTGTTCAAGCATAAGCGGTCTCGAGACAGACACGTCAAACTGCACACGGGAGACAGAAAGTACCGCTGCGCGCATTGCGAGTCGGCCTTCTCTAGGAGTGATCACTTGAAAATCCACATGAAGACACACGACAACCAAAAGCCATTCCAGTGTACGGTCTGCAACCGGGGGTACAACACGGCGGCGGCGCTGACGTCGCACATGCAGGGACACAAGCGCGACCGCGAGGGCCGGGAGACGGACAGGAGACGGGCCCTGCGCTGTCTGCGCTGCGGAGAAGCGTTCAGGAGACCGGACATGCTACAGGCGCACATGACCAGCGTGCACGGATTCGAAACAACATCTATGACTCCCCCTCGTCGGGTAGCATCTCAACCACCGCCCACTTTACTCGCCTGCATATACTGCACTAGAGACACGTTCACGAGCATGGAGCAGTTGCAGTTGCATGTACGCGCTGCGCACTCGGCCATCTTGAATGGCGAAGCTCCAGCGCAATACACAGTAGACCAACCCGCACCTACAGATTTAAGTAGACGGAGTTCTGATGATGCATCCGTTGCAAAACGTCCACGTTCCAGCACGGGTTCTGTCACACCAAAGACCACTCTTTCTCCGAGTACTCTGTTGTGTAATCAATGTGACGCAGCTTTACCAGACTTTGAAGCGTTCCGGGCTCACTTGAAAGGACATCTCGAAGAAGGAGGTGAACTTCGCACGAGTCCGACTCCATGTGTCCATTGCGGTGCAACTTTTGCTGATGCGGCTGCCTCAGAAAGACATTTAGCTGCACACTATTTAGCCGTGTCTTGTGAATATAGCTGTCACAGCTGTGCCCGAAGTTTCCCTACGACTGAAGAACTTCAAAAGCACTTACTGGAAATGCACACTCATCATATGTACCGATGTTCCCTTTGCAAAGAAATATTTGATTCCAAGGTTTCCATACAGGCTCACTTCGCAATGGCACACAGCGGTGAGAACAAGGTGTGGGTATGTCGGTCATGCGGCGCCGCCGGCGGGGCGCTACGCTCGGAGGCGGAGGGCGCGGCGCACGTGCGGGCGAGACACGCGGCCGCACGCTGCGCCTGCGGGGCCGTGCTCCCCGGGGCCCGCGCGCTGAGAGCCCACACCGCTGCGCATCATGCCTACCGGTGCCCAGTTCCAAGCTGTACCGAGACCTTCGCTGTACAGTATCTACTTGAGCGGCATATGCAGGCTTACCATGCTATAGCACAGCAGGTTGTAAACGGTGATGTGACAAGAGTAAAGCGTGGCGAAAACAACAACGGACTAGAAGAAGACTGTCCGCCGTGCGTCACGGTAGAAGGCAACGGGTCTGATGAAAGGCGACGCAAGAACGGCGCAGTAGCGCTGCAGTGTGCGTATTGCGGCGAGCGCACGCGCAGCCGAGCTGAGCTGGAAGCGCATACCCGCGCACATTCCGGCACCGCAGCCACCAGGCACAAGTGTCTCATATGCGACGAGATACTACCGTCCGCTGCAGTGCTCGCTGAACACAAACTTACACATTGCAAGgtaatTGCCGGAGACGTATGTGCACGATGCCGATCCCGTCTACCTTCAGAGGACGCTTTCTTAACTCACATGGCACGTCACCACCCAGCCCTGCCAGCACCGTGCGTCATATGTCGCCAAACTCTAGCGTCAGAAGCTGAAGCACGCCTACACGCTAGATTCCACTTACGTCCAAACGAAGATGAACAGAGGTGCGCAATATGCCTTAGAGCGCTGTCTGAGAGTGAGGCTGGAGACGGCGCTAGAGCGTGCTCTTCGTGTTACGCTCGACACGCTACTCCAAGACCTCCTCCCCCAGCAGATCACGATTGTAGGCTCTGCCGTCGCACTTTAGGTTCTCCGACCCGATTACAAGCTCACCTCATAGAACATACGTTTGCTGGCATCGGGGCGTTTACGTGCTATTTATGTTCAGCAATGTTCACCAGTGCCGCCGGTCTACAGAGGCATTTACCCGAACATGCTGCAGCGCCAAGGCCCTACGATTGTGGTCGTTGCGGCTTAAAGTTTTTCTTCCGTGCCGAACTAGACAATCACGCGTTTGTCCATTTGGAGGAGGCTGAAATCGCTCAAAGAGCGTTTTACGAGGCTTATGCCCGTGGCGCTGCTTCAGCGTGGGCAGCTTTACAACCAACTGAACCTACACCACAGCCCCAAGTGACGTCTCCATTGCAACCAGCCGAAGTACCGGTGAAGCAAGAGCCGGAGATAAAAGAAGAACGCGTTGATGAATATATAGAAGTAGCGTCGCCGCCGCCTCCACAGATTGAAGCAGTGGTTAGCCCGCCTCCCGTGGTGAAACAAGaaaataaagaagaagaagaagaataa
- Protein Sequence
- MQLFLPEALGSVGSTAGSSWPSSTPEPSPSSTPSAEVDADEAEPPFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGRETDRRRALRCLRCGEAFRRPDMLQAHMTSVHGFETTSMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSAILNGEAPAQYTVDQPAPTDLSRRSSDDASVAKRPRSSTGSVTPKTTLSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGGELRTSPTPCVHCGATFADAAASERHLAAHYLAVSCEYSCHSCARSFPTTEELQKHLLEMHTHHMYRCSLCKEIFDSKVSIQAHFAMAHSGENKVWVCRSCGAAGGALRSEAEGAAHVRARHAAARCACGAVLPGARALRAHTAAHHAYRCPVPSCTETFAVQYLLERHMQAYHAIAQQVVNGDVTRVKRGENNNGLEEDCPPCVTVEGNGSDERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGTAATRHKCLICDEILPSAAVLAEHKLTHCKVIAGDVCARCRSRLPSEDAFLTHMARHHPALPAPCVICRQTLASEAEARLHARFHLRPNEDEQRCAICLRALSESEAGDGARACSSCYARHATPRPPPPADHDCRLCRRTLGSPTRLQAHLIEHTFAGIGAFTCYLCSAMFTSAAGLQRHLPEHAAAPRPYDCGRCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALQPTEPTPQPQVTSPLQPAEVPVKQEPEIKEERVDEYIEVASPPPPQIEAVVSPPPVVKQENKEEEEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437318;
- 90% Identity
- iTF_01178881;
- 80% Identity
- -