Basic Information

Transcription Factor Domain

TF Family: IRF
Domain: IRF domain
PFAM: PF00605
TF Group: Helix-turn-helix
Description: This family of transcription factors are important in the regulation of interferons in response to infection by virus and in the regulation of interferon-inducible genes. Three of the five conserved tryptophan residues bind to DNA.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.0011 36 5.6 0.1 16 38 36 58 27 60 0.82

2 5 0.0014 48 5.2 0.1 17 38 61 82 55 85 0.85

3 5 0.00038 13 7.0 0.3 17 39 85 107 79 117 0.74

4 5 0.001 35 5.6 0.2 16 39 120 143 114 149 0.83

5 5 0.00028 9.5 7.5 0.2 17 39 145 167 137 178 0.76

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.0011	36	5.6	0.1	16	38	36	58	27	60	0.82
2	5	0.0014	48	5.2	0.1	17	38	61	82	55	85	0.85
3	5	0.00038	13	7.0	0.3	17	39	85	107	79	117	0.74
4	5	0.001	35	5.6	0.2	16	39	120	143	114	149	0.83
5	5	0.00028	9.5	7.5	0.2	17	39	145	167	137	178	0.76

Coding Sequence: atgctctatgcTTATTACATTTTCCTCCAGCCTCATTACCTGGCTGGACCGCAGCCTACTTCACTCACGTCAGATGACGCAAAGGAGGAAAACGAAAAAGTTGACTTGGGAGTACCTTGGGAGGAAAACGAAAAAGTAGACTTGGGAGTACCTTGGGAGGAAAACGAAAAAGTTGACTTGGGAGTACCTTGGGAGGAAAACGAAAAAGTAGACTTGGGAGTACCTTGGGAGGAAAACGAAAAAGTAGACTTGGGAGTATCTTGGGAGGAAAACGAAAAAGTAGACTTGGGAGTACCTTGGGAGGAAAACGAAAAAGTAGACTTGGTAGTACCTTGGGAGGAAAACGAAAAAGTTGACTTGGGAGTACCTTGGGAGGAAAACGAAAAAGTAGACTTGGGAGTACCTTGGGAGGAAAACGAAAAAGTAGACTTGGGAGTATCTTGGGAGGAAAACGAAAAAGTAGACTTGGGAGTACCTTGGGAGGAAAACGAAAAAGTTGACTTGGGAGTACCTTGGGAGGAAAACGAAAAAGTAAACTTGGGAGTCCTTTAA
Protein Sequence: MLYAYYIFLQPHYLAGPQPTSLTSDDAKEENEKVDLGVPWEENEKVDLGVPWEENEKVDLGVPWEENEKVDLGVPWEENEKVDLGVSWEENEKVDLGVPWEENEKVDLVVPWEENEKVDLGVPWEENEKVDLGVPWEENEKVDLGVSWEENEKVDLGVPWEENEKVDLGVPWEENEKVNLGVL

Sequence clustering based on sequence similarity using MMseqs2