Basic Information

Insect: Heliothis virescens
Gene Symbol: -
Assembly: GCA_002382865.1
Location: NWSH01000444.1:226434-245645[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 6.3e-05 0.0037 17.4 0.1 3 23 136 156 135 156 0.97

2 15 5.7e-07 3.4e-05 23.8 1.2 1 23 162 184 162 184 0.99

3 15 3.5e-06 0.00021 21.3 2.7 1 23 190 212 190 212 0.99

4 15 2.3e-06 0.00014 21.9 2.6 1 23 227 249 227 249 0.98

5 15 5.6e-05 0.0034 17.5 0.6 1 23 264 286 264 286 0.98

6 15 3.2e-05 0.0019 18.3 3.1 1 23 301 323 301 323 0.98

7 15 2.2e-07 1.3e-05 25.1 1.5 1 23 338 360 338 360 0.99

8 15 0.0001 0.006 16.7 2.8 1 23 366 388 366 388 0.98

9 15 0.023 1.4 9.3 1.8 1 23 395 417 395 417 0.98

10 15 3.8e-07 2.3e-05 24.3 2.3 1 23 423 445 423 445 0.99

11 15 0.026 1.6 9.1 1.8 1 23 452 474 452 474 0.98

12 15 1.6e-06 9.3e-05 22.4 1.5 1 23 480 502 480 502 0.99

13 15 0.0013 0.075 13.3 0.3 1 20 508 527 508 530 0.93

14 15 2.1e-05 0.0012 18.9 1.3 2 23 537 558 536 558 0.96

15 15 1.9e-06 0.00011 22.2 1.3 1 23 564 587 564 587 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	6.3e-05	0.0037	17.4	0.1	3	23	136	156	135	156	0.97
2	15	5.7e-07	3.4e-05	23.8	1.2	1	23	162	184	162	184	0.99
3	15	3.5e-06	0.00021	21.3	2.7	1	23	190	212	190	212	0.99
4	15	2.3e-06	0.00014	21.9	2.6	1	23	227	249	227	249	0.98
5	15	5.6e-05	0.0034	17.5	0.6	1	23	264	286	264	286	0.98
6	15	3.2e-05	0.0019	18.3	3.1	1	23	301	323	301	323	0.98
7	15	2.2e-07	1.3e-05	25.1	1.5	1	23	338	360	338	360	0.99
8	15	0.0001	0.006	16.7	2.8	1	23	366	388	366	388	0.98
9	15	0.023	1.4	9.3	1.8	1	23	395	417	395	417	0.98
10	15	3.8e-07	2.3e-05	24.3	2.3	1	23	423	445	423	445	0.99
11	15	0.026	1.6	9.1	1.8	1	23	452	474	452	474	0.98
12	15	1.6e-06	9.3e-05	22.4	1.5	1	23	480	502	480	502	0.99
13	15	0.0013	0.075	13.3	0.3	1	20	508	527	508	530	0.93
14	15	2.1e-05	0.0012	18.9	1.3	2	23	537	558	536	558	0.96
15	15	1.9e-06	0.00011	22.2	1.3	1	23	564	587	564	587	0.97

Sequence Information

Coding Sequence: ATGTTCGAACAGCAGATCAAGGCTGAACCCATGAGTTTCTACACATCTCATCCACACGTACACACCGGTCCCCCAACCATAATTCGGTCAGATTCAAGCCATGCCTCCATCATCAACATGAACCAACATCACCAAGCACACCAGGAGGATTCTAAAGATAGCCTCATAGTACAACAGCAAGTACAACATCAGCAAGATCTCATGGAACAACACCAGCAACAACAAGAAATGCAACAACAAGACGATGAGctgaGCTTCAAAGGCATGGAAGATGAAGGAGTTGAAATGGATATGGACGGACGACAATGTTCTCAGGGTATGGGAGTGGATATGGGATCAGTACAAACTAAGATGGAAGTATCAAACGGGGGTGGACAGTCCACGCCTCGATCTAAGCCACAGGCCTGTAAGGTGTGTGGCAAAGTTCTGTCGTCAGCTTCTTCTTACTATGTCCACATGAAGCTTCACTCAGGAAACAAACCCTTTCAGTGCACTGTGTGCGATGCAGCTTTTTGCCGAAAGCCCTACTTAGAGGTGCACATGCGCACCCACACGGGCGAGCGCCCATTCCAGTGCGACCTCTGCCTCAAGCGATTTACGCAGAAGTCCAGTCTCAACACGCACAAACGTGTTCACACAGATGAGCACATGCGCGCGTTGATGGTGAAGGACCGGCCCTACAAGTGTGAGCTCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATTCACACGGAGGAACACAGACGTGCGCTGCTGGCTAAGGATCGGCCCTACCAATGCGGCATCTGCTTTGTGAGATTCACCCAGAAATCAAGTTTGGGCCGGCACGGAAAAATACATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGACATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACTCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCAGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACCCACACCGGCGAGCGGCCGTATCAGTGCGACATCTGCCTGAAGCGCTTCACACAGAAATCCAGTCTCAACATCCACAAACGGACGCACTCAGTGCAGGGGCGGCCCTTCCAGTGCCTGCAGTGCCCCGCCGCCTTCACCTGCAAGCAGTACCTGGAGATCCACAACCGCACGCACACCGGCGAGCGCCCCTACCAGTGTGACGTATGCCTCAAGAGATTCGCGCAAAAATCTACACTCAATATACACAAACGAACGCACACAGGTGAACGCCCATATGCTTGTGATATTTGTCAGAAACGTTTTGCTGTGAAGAGCTACGTAACAGCGCACAGATGGTCCCACGTGGCCGACAAGCCGCTGAACTGCGACCGCTGCTCGATGTCGTTCACGTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACTCCACCGGCTCGTGCTACGAGTGCAGCGTCTGCGGCCGCTCCTTCGTCAGGGACAGCTATCTAATAAGGCACCACAACCGCGTCCACCGCGAGAACCATAGCAACGTGTCGGCGAACAGTATCGGCACTATCAACAGTGTTGCCACCAACACCAACAATTCTAACAACAGCAACTTCGACTCCCCCGGCGTTTGTGACTTAAGCTTTGTACCAATGGTGAATCGTTACATGACATCTCAGGGGACCCAAGTGTCCATGCAAGACACGAGCAAAATGTCAGCGATGTCGCCACAGTCTATTGCGTctatttCGTCGCCCCCTCCTTCGCATACCCCAACGCCGCAGCCCCAGATGTCCGGTCAGATGCATCTCGCAGACTGA
Protein Sequence: MFEQQIKAEPMSFYTSHPHVHTGPPTIIRSDSSHASIINMNQHHQAHQEDSKDSLIVQQQVQHQQDLMEQHQQQQEMQQQDDELSFKGMEDEGVEMDMDGRQCSQGMGVDMGSVQTKMEVSNGGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYKCELCQMRFTQSSSLNRHKKIHTEEHRRALLAKDRPYQCGICFVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMSFTSKSQFALHIRTHSTGSCYECSVCGRSFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSNNSNFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTSKMSAMSPQSIASISSPPPSHTPTPQPQMSGQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00784581;
90% Identity: iTF_00784581; iTF_00952902;
80% Identity: -