Hvir001196.1
Basic Information
- Insect
- Heliothis virescens
- Gene Symbol
- -
- Assembly
- GCA_002382865.1
- Location
- NWSH01001737.1:31118-65559[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.4e-16 2.8e-12 45.8 0.0 7 70 245 306 241 311 0.88
Sequence Information
- Coding Sequence
- aTGTCGGAGGAAATGGCGGTGTCTGATAACACAACTGGGGACGAAGCTAAAGTAACCAACGATGAGGCAACCACAGCTGCAGTCCCGGAGCCCGAGACAGTGGCGGAGGAGGCGCCACCCGAGCCCATAGCTCCTGTTGCTGAGGAGCCACCAGCTTTGGCGGAAGAGGAGCCAGCAGTACCAGACCCAGAAGAAGTCCAACCAAAAGAACCAAAGATAGAGGATGAGGAACCAACAGACGTGAAGAAGGAACCGGAATCTGATGACACTGACATACCAATTGACCCCCCAGAGGACATAGACATAAAGAACGAGGATGAAGTATTTGTCAAAGATGAGATTGAGACCTTTGAGCATAATATTGAGGAACATATAAGTAGAGGTATCAAGAGGAGGGCGTCGTCTACTTTCAGTGATGATGGAGACGAAGAGTTTAAAGGTTTTGATGACATTAAAGCGGAAATTAAGACGGAGGGTTACTTGAGTATCCTGGAGCGACTGGAGGAAGAGGTGACGGCAGCCAGCAAAGACCTAGTTCCCCTGAAAACAGTTCTAGCCACTCTCCACCCACCGGGCAGAGCATCTAAGCGACCACGCAAAGACACAGACGGATCCAGGCCCTCATCAGCTCTATCCTCAAGGTCAGACGGAGATGCGGCTACTGATGCCAGTGCAGCGTCGTCCCCAGCGCAGCGCGGTCGTCGTGCGACGACAGAGATGTCGTCTCCTCTACTCAGGGTGCCTTTAGAGAGAGGCTGGAAGAGAGAGCTGGTGTTCAGGGCGGCGCTAGATGCTCACTCCAGAAGGAACGCCGATATATATTACTATACGCCAGCTGGGAAGAAGCTAAGGTCTACTAGGGAGGTAGCAGAACATCTGGCCGGTACGGGGCTAACTGTGGAGAATTTCTCCTTTTTCAAAGAGCCACTCGGAGTTGATGATCCTGAGAAGGAAATTATAAGAGACGCGAAGCTGATCCGTCGCGTGGAGTCCCCGGtggcggcggcgccggcgcccgtGGAGGGCAAGCGTACGCCCAAGCCCAAGCCGCCCAAGGGCGCCAGCCCCGAGCCCGCCGCCCCGGCGCAGCCCGCCAAGTCACCGCCTGCCAAGCTCAAGGTGAAATCAATGGGTTCCCGGCTCAGCAACAGCGCGGCCCCCGCTGCAGCAACGGCTACAGCAGCAGCTACAGCTACACCGCCCCCCAAGCAACAGAAGAAGCCacagcaacaacaacaacagcaacagGCAACAACTCCGAGCAACGCCGACAACAACAACAGCGCAGCGTGGAAGAAACCCAGCGAGGCCCGGCGCACGCGCGTGACGAACGGCGCCGCCGTCACCGCCGCCTCGCCGCGACGCCGCGCCAGGCAGCGGCCTGACGACACCGACCACTTCACCGCCTTCTATAATAAGGCGCAGgagaataattataatgttgtgGTGCAGATCTTCCAATACCTGGGCATGCGCGAGCTAGCGCAGTGTGCCCGCGTGTGTCGCCTGTGGAGACAGCTGGCCGCCACGCCGGCGCTCTGGAGACACGTCCGGATGAAGAACTCCCACgtGAGTGATTGGGCAGGCCTGTGTGCTGCGTTGAAGCGTCACGGCACGAAGCGGCTGGACCTGCGCAAGATGTTGCTGCCGCAGAACGACACGGTGTTCTGGGAGCAGTTCGCGCAGCACATCCCCGTCGTGGACACGCTCGAGCGCATCGAGATGTGCCGCTGTCCCGCGCGGGCCGTCGAGGCCGTGTGTCGCGGCCTGCCCGGCCTGCGCAGCCTCGCCGCCCTCGCCATCCGCGACGCCGTGCTGGACCCGGCGCCTCTGGCCGCGCTGCCCCTGCTGCACGAGCTGCGCCTCAAGTCCATGGCGGGGCTGTCGCTGTCGCAGGACCTGCGCCACCTGGCGGCGCTGACGCAGCTGACGCACCTGTCGCTGACCAGCATCAAGGAGCTGGGCTGGTGTGCGTGCGACGTGATCGGCTCGCTGCCGGCGCTGGAGTCGCTGGAGCTGGGCGAGTGCACGTTCCGCGCGGGCTTCGCCGCCGTGCTGGCGCGCCTGGCGCGGCTGCGGCGCCTGCGCCTGGAGCGCGGCagcagcgccgccgccgccgacgtGCTGCGGGCGCTGGCGCGGCTGCCCCTCCTCACGCGCCTGGAGCTCGTCAACATCGACGTCAAGCCCGGCTTCGACGACGCGCTGGCCGAGTGCCGCAACGTGCAGCGCCTGCTGATCATCCCCACGTACGTGTCGCAGTCGGCCACCACCAACCGGCAGGTGCTGTCGGGCGTGCTGCGCCTGCGCGAGTCGCTGACGCACCTGATGTGGGGGGTGACCATCGAGCTGCTGCGCGTGACGGAGCTGTTCATCGACCAGTGCGAGCAGGCGGGCTCGCCCAAGCGCCGCGACGTGGGCGAGTGCATCCCCGTGCTGAAGCCGGTGCCGGGCTGCCGCCTGCCCGACgccgccgccgtggccggccCGCCGCAGGTGGAGATCCTGCCGCTGCCCACGCTGCAGCGCCTGCTGTCGCAGCAGCTGCCCACCACCAAGCTCAAGCTGCTGCGCATCCCCTTCCACGCCACCTGGCGCCAATCGCTCGCAGACTTCCAGTAG
- Protein Sequence
- MSEEMAVSDNTTGDEAKVTNDEATTAAVPEPETVAEEAPPEPIAPVAEEPPALAEEEPAVPDPEEVQPKEPKIEDEEPTDVKKEPESDDTDIPIDPPEDIDIKNEDEVFVKDEIETFEHNIEEHISRGIKRRASSTFSDDGDEEFKGFDDIKAEIKTEGYLSILERLEEEVTAASKDLVPLKTVLATLHPPGRASKRPRKDTDGSRPSSALSSRSDGDAATDASAASSPAQRGRRATTEMSSPLLRVPLERGWKRELVFRAALDAHSRRNADIYYYTPAGKKLRSTREVAEHLAGTGLTVENFSFFKEPLGVDDPEKEIIRDAKLIRRVESPVAAAPAPVEGKRTPKPKPPKGASPEPAAPAQPAKSPPAKLKVKSMGSRLSNSAAPAAATATAAATATPPPKQQKKPQQQQQQQQATTPSNADNNNSAAWKKPSEARRTRVTNGAAVTAASPRRRARQRPDDTDHFTAFYNKAQENNYNVVVQIFQYLGMRELAQCARVCRLWRQLAATPALWRHVRMKNSHVSDWAGLCAALKRHGTKRLDLRKMLLPQNDTVFWEQFAQHIPVVDTLERIEMCRCPARAVEAVCRGLPGLRSLAALAIRDAVLDPAPLAALPLLHELRLKSMAGLSLSQDLRHLAALTQLTHLSLTSIKELGWCACDVIGSLPALESLELGECTFRAGFAAVLARLARLRRLRLERGSSAAAADVLRALARLPLLTRLELVNIDVKPGFDDALAECRNVQRLLIIPTYVSQSATTNRQVLSGVLRLRESLTHLMWGVTIELLRVTELFIDQCEQAGSPKRRDVGECIPVLKPVPGCRLPDAAAVAGPPQVEILPLPTLQRLLSQQLPTTKLKLLRIPFHATWRQSLADFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00784416;
- 90% Identity
- iTF_00784416;
- 80% Identity
- -