Hvir014479.1
Basic Information
- Insect
- Heliothis virescens
- Gene Symbol
- lrrfip2
- Assembly
- GCA_002382865.1
- Location
- NWSH01001058.1:127774-151262[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-79 2.1e-75 253.5 22.3 1 285 27 305 27 309 0.89 2 2 0.01 1.5e+02 1.2 1.3 132 169 291 328 282 331 0.56
Sequence Information
- Coding Sequence
- ATGGATCCGTCGCGGCGCCAGCGCACGCAGACGAAGGCCACGGCGGAGGAGCAGGCCCTCGACCAGATTGCCAGAGAGGCGGAGCAGAGGTTGGCAGCGCGACGGGCGGCGAGGGCTGAAGCGCGTGAGATACGCATGCGCGAGCTGGAGCGTCAGCAGCGCGAACAGGAAGACCATGCCGACAAGGCGTACGATATGTATGCGGGGAAAACGCCAGAGACGGTGGGTCGCCGACCACGGCTGGCGGCGCTCAGCCCCGCCGTGCACTCACCACGACGTAGCTCTGAGGACTCTATCGATGATGGATTCAGCATCAAGGACCTCAGGCACGAGTTGAAAGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTCGAGCTGCTCAAGGACCGGATAGAGGAGCTGCACGAGGAGTACGCTCAACTACAGCGCGAGCACAAAGAAAAATGCTCAGCCTTCGAGCGTTTACGTCGCGAGCACGAGTCGGTGGTGGCGTCGCTGACGCTGGCGCGGGACGCCGTGCGGGCCAGggacgccgccgccgccagcgcGGGCTTCGCCTTCGTGGACGCGGCGGCGCTGGAGCCGGCCGCCCGGGACACTGCGGGCGAGGCCGTGGGCGACGTGCCGGCGCTGGCGCTCGTCACGCACCAGGCGCATCAGCTGCTGCACGACGCGGGGGAGGGCACGCTCGACGTGCGGTTGCAGAAGCTGGTGAGCTCGAAGCAGGCGCTGGAGTCGGAGGTGCGCAAGCTGAAGCTGCAGCTCAACGAGGAACGCGCCGCCAGGCAGAATGGCGTCGCTAACCATCATGATCAAGAATACGAAAACGAAcTGGAGTCAGCTCGGGAAGCTCTCAACCGGGTTGAAGAGTTGGAGACTGAGAACAGCCACCTCACGAAACGACTGGACAAACTCAAGAACGCCAAGTCCGCGTTACTGAAGGACCTGTGA
- Protein Sequence
- MDPSRRQRTQTKATAEEQALDQIAREAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPETVGRRPRLAALSPAVHSPRRSSEDSIDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAFERLRREHESVVASLTLARDAVRARDAAAASAGFAFVDAAALEPAARDTAGEAVGDVPALALVTHQAHQLLHDAGEGTLDVRLQKLVSSKQALESEVRKLKLQLNEERAARQNGVANHHDQEYENELESAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -