Hvir011088.1
Basic Information
- Insect
- Heliothis virescens
- Gene Symbol
- sip1
- Assembly
- GCA_002382865.1
- Location
- NWSH01000282.1:177887-190914[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.5e-53 3.3e-49 167.7 1.9 2 230 366 576 365 588 0.96 2 4 0.0003 2.2 7.5 0.0 199 230 594 624 582 638 0.88 3 4 0.00032 2.4 7.4 0.0 199 230 642 672 633 684 0.88 4 4 3.5e-10 2.6e-06 27.0 0.0 199 275 690 765 678 765 0.93
Sequence Information
- Coding Sequence
- ATGTCGGACGACGAAGTAATGCGTTTTGAAATTACGGATTATGATTTAGACAATGAATTTAATCCTAACAGAAGCAGGAGGGCTAAAAAGGAACATCAGATTTATGGTGTCTGGGCCAAAGACAGTGATGAGGATGACAACGAAGACAATATTAGGCAAAGATCTCGCAAGCCCAAAGACTTCTCAGCACCCATTGGCTTTGTGGCCGGGGGAGTGCAACAGGctggaaagaaaaaagaagaaagtaAAGAAATAGAATCATCGGAGGCTGGGACATCCCGTCCCAAGTTTGCAGACAGTTCTGATGAGGAGGAACAGAATGCTCCAGATGCTAGTGAGACCGCTGGCATCAGGAGACAGGGGCAAGGCATGAGGCCGGTCAACCTCGGTGGCAATGTGGGCACTTGGGAGAAACACACCAAGGGTATTGGAGCCAAGCTCTTGTTGAAGATGGGTTACCAACCAGGCATGGGTTTGGGCAAAGACCTCCAGGGTATCTCAGCACCAGTGGAGGCTACCGTCAGGCGAGGAAGGGGTGCTATAGGTGCATATGGACCTGAGAAAGCAGcgCAAAAAGCCAAAAAAGAGGAAGAGCTCCGCAAACTGAAAGAAAAGGAAGACGATAAAGGCTCCAAGGAGAAGGCGTACAACTGGAAGAAGTCCCACAAAGGCCGCTACTTCTACCGCGACGCCGCCGACGTCATACAAGAGGGTAAACCCACGATGCATACTATTACCAGTAACGAGTTGTCCCGCGTGCCTGTGATCGACATGACGGGCAAGGAGAAGCGCGTGCTGAGCGGCTACCACGCActgcgcgccgccgcgccgcgcttCGAGCACGAGCCGCGCCGCAAGTGCGACAACTTCGCCGCGCCGCAGCTGGCACATAACCTGCAGCTCATGGTGGAATGCTGTGAACAGGACATAATCCAAAACGCCCGCGAGCTCCAATCAGCGGAAGACGAGATCGTAGTCCTGGAGCGAGACTTGGAAGACTGCAACATTAAGCTGCAGGAACAGGACAAGGTCATCAATAAGGTGGAGGGCATCCTGCAACGGGTCGAGATGCTGAACAAACCTGATGTCTCGCTGGAGACTGCCCATGATGTGCTTGCTGAACTGAAGGAATCCTACCCCCTAGAATACGAGATGTTCGGACTAGGCACGATAGCGGGTAACATCGTGAGTCCTCTGCTGAGCTCGCTGCTGGCGGCGTGGGACCCGCTGCAGGCGCCTGAAGAACCCATACCCACCTTCTTAAAGTGGAGGAAACTGCTCACCGAAGAGGCCTACAATAGTTTGCTCTGGCAACATTATGTGCCGCAGTTGACGGCTGCTGCTGAGTCATGGAACCCCCGTGCCCCCACGAAGATGGTTCGCGCGGTGACGGCATGGCAGGCGGCGTGCCCGGCCTGGGTGTCGCGCGCGGCAGTGACGCGCGGGGTGCTGCCGCGCCTGCTGGCCGCCGTGCGCGCCTGGGACCCCACGCACGACACGCAGCCGCTGCACCTGTGGGTGCTGCCCTGGCATGATATCGCAGGTGAAGCGCTAGCCAGTTCAGTGTACCCGCTGATCCGGTCGCGGCTGGCGGCGGCGCTGTCGGCCTGGCACCCCGCCGACTCGTCCGCCCGCGGCGTGCTGGGCGCCTGGGCCGCCGCCTGGGGCCCGGCGCTGGGGGCCCTGCTGCACCAGCACATCGTGCCCAAGCTCGACCACTGTCTGCAGCACGCGCCGCTCGAGCTCGTCGGCAGGGAGAACAGTAAGTACCGTAGTACCCAGCACCTGGGCGCCTGGGCCGCCGCCTGGGGCCCGGCGCTGGGGGCCCTGCTGCACCAGCACATCGTGCCCAAGCTCGACCACTGTCTGCAGCACGCGCCGCTCGAGCTCGTCGGCAGGGAGAACAGTAAGTACCGTAGTACCCAGCACCTGGGCGCCTGGGCCGCCGCCTGGGGCCCGGCGCTGGGGGCCCTGCTGCACCAGCACATCGTGCCCAAGCTCGACCACTGTCTGCAGCACGCGCCGCTCGAGCTCGTCGGCAGGGAGAACAGTAAGTACCGTAGTACCCAGCACCTGGGCGCCTGGGCCGCCGCCTGGGGCCCGGCGCTGGGGGCCCTGCTGCACCAGCACATCGTGCCCAAGCTCGACCACTGTCTGCAGCACGCGCCGCTCGAGCTCGTCGGCAGGGAGAACACGGCGTGGCTGTGGTGCGTGGAGTGGCTGGAGCTGCTGGGCGCGGCGACGGTGGGCGCCAtcgcggcgcgcgcgctgctGCCGCGCTGgctggccgcgctcgccgccTGGCTCAACACCAACCCGCCGCACGCCACCGTACTCAACTCATATACTGATTTTAAGAAAATGTTCCCCGAAGAAGTATTGAAAGAACCGGCGGTGCGTGACGCCTTCCGAAAAGCTTTAGACATGATGAACCGCAGCGCAGACCTGGAGTCCGTGGAACCGCCCCCTCCGCCCCGCTTCACCATGCCCGAGCCTAAGGAAACTTCTAGAATCGCTGACGTCATCGCCTCAGCTACCCAAGCGAAAAGCTTCTCAGAACTTCTCGAAACGAGGTGTATCGAAAAAGGCATTACTTTCGTACCTATTGCTGGAAAGACCAGGGAAGGAAGACCTCTATACAAAATTGGAGAATTACAGTGTTACGTTATAAGAAATGTGATCATGTATTCCAATGATAGCGGCAGGACCTTCAGCCCTATTAGCATGGATAAACTCCTGAGTATGGTCGAAGATTAa
- Protein Sequence
- MSDDEVMRFEITDYDLDNEFNPNRSRRAKKEHQIYGVWAKDSDEDDNEDNIRQRSRKPKDFSAPIGFVAGGVQQAGKKKEESKEIESSEAGTSRPKFADSSDEEEQNAPDASETAGIRRQGQGMRPVNLGGNVGTWEKHTKGIGAKLLLKMGYQPGMGLGKDLQGISAPVEATVRRGRGAIGAYGPEKAAQKAKKEEELRKLKEKEDDKGSKEKAYNWKKSHKGRYFYRDAADVIQEGKPTMHTITSNELSRVPVIDMTGKEKRVLSGYHALRAAAPRFEHEPRRKCDNFAAPQLAHNLQLMVECCEQDIIQNARELQSAEDEIVVLERDLEDCNIKLQEQDKVINKVEGILQRVEMLNKPDVSLETAHDVLAELKESYPLEYEMFGLGTIAGNIVSPLLSSLLAAWDPLQAPEEPIPTFLKWRKLLTEEAYNSLLWQHYVPQLTAAAESWNPRAPTKMVRAVTAWQAACPAWVSRAAVTRGVLPRLLAAVRAWDPTHDTQPLHLWVLPWHDIAGEALASSVYPLIRSRLAAALSAWHPADSSARGVLGAWAAAWGPALGALLHQHIVPKLDHCLQHAPLELVGRENSKYRSTQHLGAWAAAWGPALGALLHQHIVPKLDHCLQHAPLELVGRENSKYRSTQHLGAWAAAWGPALGALLHQHIVPKLDHCLQHAPLELVGRENSKYRSTQHLGAWAAAWGPALGALLHQHIVPKLDHCLQHAPLELVGRENTAWLWCVEWLELLGAATVGAIAARALLPRWLAALAAWLNTNPPHATVLNSYTDFKKMFPEEVLKEPAVRDAFRKALDMMNRSADLESVEPPPPPRFTMPEPKETSRIADVIASATQAKSFSELLETRCIEKGITFVPIAGKTREGRPLYKIGELQCYVIRNVIMYSNDSGRTFSPISMDKLLSMVED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00785222;
- 90% Identity
- -
- 80% Identity
- -